The 2.0 version of rSNPBase

Variant report

Variant rs12124847
Chromosome Location chr1:46380850-46380851
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46342200-46391200 Weak transcription Primary hematopoietic stem cells short term culture blood
2 chr1:46363000-46393800 Weak transcription A549 lung
3 chr1:46373000-46395000 Weak transcription Gastric stomach
4 chr1:46376000-46386800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr1:46377600-46381000 Enhancers Fetal Adrenal Gland Adrenal Gland
6 chr1:46378200-46381000 Enhancers Ovary ovary
7 chr1:46378600-46381000 Flanking Active TSS HSMMtube muscle
8 chr1:46378600-46383000 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr1:46378800-46381800 Active TSS Right Atrium heart
10 chr1:46379000-46381200 Active TSS Fetal Muscle Trunk muscle
11 chr1:46379000-46383000 Active TSS Skeletal Muscle Male skeletal muscle
12 chr1:46379200-46387200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr1:46379400-46381200 Active TSS Left Ventricle heart
14 chr1:46379400-46382800 Weak transcription Duodenum Mucosa Duodenum
15 chr1:46379400-46383000 Active TSS Psoas Muscle Psoas
16 chr1:46379400-46383000 Active TSS Right Ventricle heart
17 chr1:46379400-46385600 Weak transcription Fetal Lung lung
18 chr1:46379400-46387200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr1:46379400-46390200 Weak transcription iPS-20b Cell Line embryonic stem cell
20 chr1:46379600-46382000 Active TSS Rectal Mucosa Donor 29 rectum
21 chr1:46379600-46382600 Weak transcription Brain Inferior Temporal Lobe brain
22 chr1:46379600-46384000 Weak transcription Fetal Stomach stomach
23 chr1:46379600-46387200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:46379600-46387200 Weak transcription Fetal Kidney kidney
25 chr1:46379600-46387600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:46379600-46390000 Weak transcription GM12878-XiMat blood
27 chr1:46379600-46394600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr1:46379800-46383000 Weak transcription Aorta Aorta
29 chr1:46379800-46383000 Active TSS Skeletal Muscle Female skeletal muscle
30 chr1:46379800-46385000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr1:46379800-46387000 Weak transcription H1 Cell Line embryonic stem cell
32 chr1:46379800-46387200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr1:46379800-46389200 Weak transcription Fetal Brain Male brain
34 chr1:46379800-46390400 Weak transcription H9 Cell Line embryonic stem cell
35 chr1:46379800-46394600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:46379800-46395000 Weak transcription Brain Cingulate Gyrus brain
37 chr1:46379800-46395200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr1:46380000-46381000 Enhancers Osteobl bone
39 chr1:46380000-46387000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr1:46380000-46387200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:46380000-46387600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr1:46380000-46388600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
43 chr1:46380000-46392200 Weak transcription Fetal Brain Female brain
44 chr1:46380200-46381000 Enhancers Cortex derived primary cultured neurospheres brain
45 chr1:46380200-46381000 Active TSS Fetal Muscle Leg muscle
46 chr1:46380400-46381000 Active TSS HSMM muscle
47 chr1:46380400-46387000 Weak transcription HUES6 Cell Line embryonic stem cell
48 chr1:46380400-46387200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr1:46380400-46387600 Weak transcription Brain Germinal Matrix brain
50 chr1:46380400-46387600 Weak transcription Stomach Smooth Muscle stomach

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015