The 2.0 version of rSNPBase

Variant report

Variant rs12077974
Chromosome Location chr1:46384141-46384142
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46342200-46391200 Weak transcription Primary hematopoietic stem cells short term culture blood
2 chr1:46363000-46393800 Weak transcription A549 lung
3 chr1:46373000-46395000 Weak transcription Gastric stomach
4 chr1:46376000-46386800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr1:46379200-46387200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr1:46379400-46385600 Weak transcription Fetal Lung lung
7 chr1:46379400-46387200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:46379400-46390200 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr1:46379600-46387200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:46379600-46387200 Weak transcription Fetal Kidney kidney
11 chr1:46379600-46387600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr1:46379600-46390000 Weak transcription GM12878-XiMat blood
13 chr1:46379600-46394600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:46379800-46385000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr1:46379800-46387000 Weak transcription H1 Cell Line embryonic stem cell
16 chr1:46379800-46387200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr1:46379800-46389200 Weak transcription Fetal Brain Male brain
18 chr1:46379800-46390400 Weak transcription H9 Cell Line embryonic stem cell
19 chr1:46379800-46394600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr1:46379800-46395000 Weak transcription Brain Cingulate Gyrus brain
21 chr1:46379800-46395200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:46380000-46387000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr1:46380000-46387200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr1:46380000-46387600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr1:46380000-46388600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
26 chr1:46380000-46392200 Weak transcription Fetal Brain Female brain
27 chr1:46380400-46387000 Weak transcription HUES6 Cell Line embryonic stem cell
28 chr1:46380400-46387200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr1:46380400-46387600 Weak transcription Brain Germinal Matrix brain
30 chr1:46380400-46387600 Weak transcription Stomach Smooth Muscle stomach
31 chr1:46380400-46391800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr1:46380400-46394800 Weak transcription NHDF-Ad bronchial
33 chr1:46380400-46395000 Weak transcription NHLF lung
34 chr1:46380600-46394800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr1:46380800-46384800 Weak transcription Fetal Heart heart
36 chr1:46380800-46388000 Weak transcription Colonic Mucosa Colon
37 chr1:46380800-46391200 Weak transcription Thymus Thymus
38 chr1:46380800-46394200 Weak transcription Muscle Satellite Cultured Cells --
39 chr1:46380800-46394400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr1:46380800-46395000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr1:46380800-46404600 Weak transcription Rectal Smooth Muscle rectum
42 chr1:46381000-46384800 Weak transcription HSMM muscle
43 chr1:46381000-46388400 Weak transcription Spleen Spleen
44 chr1:46381000-46390600 Weak transcription Small Intestine intestine
45 chr1:46381000-46391200 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr1:46381000-46391400 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr1:46381200-46387400 Weak transcription Fetal Muscle Trunk muscle
48 chr1:46381600-46388200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr1:46382000-46387200 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr1:46382200-46384800 Weak transcription Hela-S3 cervix

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Last update: Aug 31, 2015