The 2.0 version of rSNPBase

Variant report

Variant rs12097799
Chromosome Location chr1:46459886-46459887
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46426800-46460000 Weak transcription Psoas Muscle Psoas
2 chr1:46435200-46461000 Weak transcription K562 blood
3 chr1:46436200-46468800 Weak transcription Stomach Smooth Muscle stomach
4 chr1:46438200-46471400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:46438400-46466200 Weak transcription Left Ventricle heart
6 chr1:46438600-46463200 Weak transcription Fetal Heart heart
7 chr1:46438600-46464000 Weak transcription Primary hematopoietic stem cells short term culture blood
8 chr1:46438600-46464800 Weak transcription Fetal Muscle Trunk muscle
9 chr1:46438600-46468600 Weak transcription Fetal Brain Female brain
10 chr1:46440000-46465000 Weak transcription Dnd41 blood
11 chr1:46441000-46463200 Weak transcription HSMM muscle
12 chr1:46441400-46461000 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr1:46441400-46467200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr1:46445600-46467800 Weak transcription Colonic Mucosa Colon
15 chr1:46445600-46472000 Weak transcription A549 lung
16 chr1:46445600-46475600 Weak transcription Stomach Mucosa stomach
17 chr1:46446400-46460200 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:46446600-46463200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr1:46446600-46464000 Weak transcription Fetal Muscle Leg muscle
20 chr1:46446600-46464600 Weak transcription Primary neutrophils fromperipheralblood blood
21 chr1:46446800-46463200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:46447200-46468400 Weak transcription Primary hematopoietic stem cells blood
23 chr1:46448000-46464400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr1:46448200-46465000 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr1:46448400-46464800 Weak transcription Duodenum Mucosa Duodenum
26 chr1:46448400-46472400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:46448800-46464600 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr1:46448800-46465000 Weak transcription Fetal Stomach stomach
29 chr1:46448800-46470400 Weak transcription Fetal Lung lung
30 chr1:46450400-46468400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr1:46453600-46472000 Weak transcription Primary T cells from cord blood blood
32 chr1:46454000-46465000 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr1:46454000-46466600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr1:46454400-46460800 Weak transcription Muscle Satellite Cultured Cells --
35 chr1:46455000-46471600 Weak transcription Lung lung
36 chr1:46455400-46471200 Weak transcription Aorta Aorta
37 chr1:46456000-46463400 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr1:46456600-46464600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr1:46456600-46466600 Weak transcription Primary monocytes fromperipheralblood blood
40 chr1:46457000-46466600 Weak transcription Monocytes-CD14+_RO01746 blood
41 chr1:46457000-46472800 Weak transcription Small Intestine intestine
42 chr1:46457800-46468400 Weak transcription Fetal Intestine Small intestine
43 chr1:46458000-46460200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr1:46458200-46464800 Weak transcription Fetal Intestine Large intestine
45 chr1:46458200-46465000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr1:46458600-46471400 Weak transcription Primary B cells from cord blood blood
47 chr1:46459600-46460200 Enhancers Right Ventricle heart
48 chr1:46459800-46460000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr1:46459800-46471000 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015