The 2.0 version of rSNPBase

Variant report

Variant rs7519181
Chromosome Location chr1:46387829-46387830
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46342200-46391200 Weak transcription Primary hematopoietic stem cells short term culture blood
2 chr1:46363000-46393800 Weak transcription A549 lung
3 chr1:46373000-46395000 Weak transcription Gastric stomach
4 chr1:46379400-46390200 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr1:46379600-46390000 Weak transcription GM12878-XiMat blood
6 chr1:46379600-46394600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:46379800-46389200 Weak transcription Fetal Brain Male brain
8 chr1:46379800-46390400 Weak transcription H9 Cell Line embryonic stem cell
9 chr1:46379800-46394600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr1:46379800-46395000 Weak transcription Brain Cingulate Gyrus brain
11 chr1:46379800-46395200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:46380000-46388600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr1:46380000-46392200 Weak transcription Fetal Brain Female brain
14 chr1:46380400-46391800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr1:46380400-46394800 Weak transcription NHDF-Ad bronchial
16 chr1:46380400-46395000 Weak transcription NHLF lung
17 chr1:46380600-46394800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:46380800-46388000 Weak transcription Colonic Mucosa Colon
19 chr1:46380800-46391200 Weak transcription Thymus Thymus
20 chr1:46380800-46394200 Weak transcription Muscle Satellite Cultured Cells --
21 chr1:46380800-46394400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr1:46380800-46395000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr1:46380800-46404600 Weak transcription Rectal Smooth Muscle rectum
24 chr1:46381000-46388400 Weak transcription Spleen Spleen
25 chr1:46381000-46390600 Weak transcription Small Intestine intestine
26 chr1:46381000-46391200 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr1:46381000-46391400 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr1:46381600-46388200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:46383200-46393600 Weak transcription Dnd41 blood
30 chr1:46383600-46390600 Weak transcription Duodenum Mucosa Duodenum
31 chr1:46383600-46394200 Weak transcription HepG2 liver
32 chr1:46384200-46389600 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr1:46384200-46390600 Weak transcription HSMMtube muscle
34 chr1:46384600-46388600 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr1:46385600-46389000 Strong transcription Fetal Muscle Leg muscle
36 chr1:46385600-46391400 Weak transcription HSMM muscle
37 chr1:46386600-46388800 Weak transcription Primary T cells from cord blood blood
38 chr1:46386800-46389800 Enhancers Primary Natural Killer cells fromperipheralblood blood
39 chr1:46387000-46388000 Genic enhancers Right Ventricle heart
40 chr1:46387000-46388400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr1:46387000-46388600 Enhancers HUES6 Cell Line embryonic stem cell
42 chr1:46387000-46389000 Strong transcription Fetal Intestine Small intestine
43 chr1:46387000-46389000 Strong transcription Fetal Stomach stomach
44 chr1:46387000-46389000 Enhancers Left Ventricle heart
45 chr1:46387000-46389000 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle
46 chr1:46387000-46389800 Enhancers Fetal Heart heart
47 chr1:46387200-46388000 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
48 chr1:46387200-46388000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr1:46387200-46388200 Strong transcription Rectal Mucosa Donor 29 rectum
50 chr1:46387200-46388400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015