Variant report

Variant	rs10890376
Chromosome Location	chr1:46406582-46406583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 230 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs10127690	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10158032	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10437063	0.87[EUR][1000 genomes]
rs10732844	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10749858	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10789478	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10789479	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10789484	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10789485	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10789486	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1085240	0.82[EUR][1000 genomes]
rs10890350	0.87[EUR][1000 genomes]
rs10890353	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890355	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10890358	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10890359	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890360	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10890365	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10890370	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10890371	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10890372	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10890373	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10890374	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10890377	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10890378	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10890380	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10890381	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10890382	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11211190	0.87[EUR][1000 genomes]
rs11211194	0.87[EUR][1000 genomes]
rs11211200	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11211202	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11211204	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11211205	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11211209	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11211215	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11211217	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11211218	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11211219	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11211222	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11211223	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11211228	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11211229	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11211232	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11211235	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11211236	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11211237	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11211238	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11211239	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11211244	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11211248	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12022335	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12029972	0.92[ASN][1000 genomes]
rs12060274	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12067716	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12077546	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12077916	0.85[EUR][1000 genomes]
rs12077974	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12094860	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12094901	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12097761	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12097799	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12124291	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12124847	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12131529	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12133129	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12145287	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12403666	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1588663	0.80[EUR][1000 genomes]
rs1612419	0.80[EUR][1000 genomes]
rs1613296	0.80[EUR][1000 genomes]
rs1622208	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1707317	0.82[EUR][1000 genomes]
rs1707322	0.81[EUR][1000 genomes]
rs1707337	0.82[EUR][1000 genomes]
rs1707338	0.82[EUR][1000 genomes]
rs1707339	0.82[EUR][1000 genomes]
rs1768800	0.80[EUR][1000 genomes]
rs1768801	0.80[EUR][1000 genomes]
rs1768802	0.80[EUR][1000 genomes]
rs1768807	0.82[EUR][1000 genomes]
rs1768815	0.82[EUR][1000 genomes]
rs1768817	0.82[EUR][1000 genomes]
rs1768818	0.82[EUR][1000 genomes]
rs2297883	0.82[EUR][1000 genomes]
rs2458400	0.80[EUR][1000 genomes]
rs2669156	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28636523	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28831083	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34444543	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34446427	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34694458	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35018217	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3922886	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3922887	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4073847	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074225	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4134387	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4297233	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4298677	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4390216	0.87[EUR][1000 genomes]
rs4454479	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4459051	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4460583	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4489497	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4524994	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4539075	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4553121	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4606257	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4641257	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4660318	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4660328	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4660331	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4660332	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4660334	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4660335	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4660336	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4660889	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4660895	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4660896	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4660900	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4660903	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4660904	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4660905	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4660906	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4994390	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61785583	0.88[ASN][1000 genomes]
rs61785584	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61785613	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61785614	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6429580	0.87[EUR][1000 genomes]
rs6429581	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6429588	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6657720	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6661500	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6666763	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6671754	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6672115	0.87[EUR][1000 genomes]
rs6674794	0.88[EUR][1000 genomes]
rs6675222	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6675259	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6676982	0.87[EUR][1000 genomes]
rs6677777	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6681068	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6682683	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6687301	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6690652	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6693336	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6695421	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6697830	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6701694	0.85[EUR][1000 genomes]
rs7512395	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7515491	0.86[ASN][1000 genomes]
rs7516008	0.86[ASN][1000 genomes]
rs7517560	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7519181	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7526369	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7527079	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7527244	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7527298	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7530103	0.86[ASN][1000 genomes]
rs7531911	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7532204	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7534331	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7538978	0.83[EUR][1000 genomes]
rs7539800	0.87[EUR][1000 genomes]
rs7546237	0.87[EUR][1000 genomes]
rs7547189	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7547284	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7551025	0.86[EUR][1000 genomes]
rs7553924	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs785463	0.82[EUR][1000 genomes]
rs785465	0.82[EUR][1000 genomes]
rs785466	0.82[EUR][1000 genomes]
rs785467	0.82[EUR][1000 genomes]
rs785468	0.82[EUR][1000 genomes]
rs785469	0.82[EUR][1000 genomes]
rs785470	0.82[EUR][1000 genomes]
rs785477	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs785478	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs785480	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs785483	0.80[EUR][1000 genomes]
rs785507	0.80[EUR][1000 genomes]
rs785508	0.81[EUR][1000 genomes]
rs785509	0.81[EUR][1000 genomes]
rs785510	0.82[EUR][1000 genomes]
rs785512	0.80[EUR][1000 genomes]
rs946524	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs946525	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs946527	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs946528	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9787412	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9793167	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9803784	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9919275	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
2	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
3	nsv871928	chr1:46024701-46609736	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
4	nsv1006861	chr1:46144479-46417621	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
5	nsv1003049	chr1:46144479-46476149	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
6	nsv1008219	chr1:46160098-46493958	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
7	nsv534943	chr1:46160098-46493958	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
8	nsv1000498	chr1:46171836-46438252	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
9	nsv1003986	chr1:46184925-46417621	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
10	nsv1007501	chr1:46184925-46439533	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
11	nsv534944	chr1:46184925-46439533	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
12	nsv1006891	chr1:46189258-46408032	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
13	nsv1009355	chr1:46189258-46463012	Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
14	nsv546158	chr1:46216575-46495434	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
15	nsv870911	chr1:46216575-46498375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
16	nsv431268	chr1:46223080-46495480	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
17	nsv461417	chr1:46223086-46416348	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv546160	chr1:46223086-46416348	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
19	nsv524147	chr1:46236098-46438076	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
20	nsv1007162	chr1:46244432-46417621	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
21	nsv1015136	chr1:46244432-46439533	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	nsv1003517	chr1:46244432-46609881	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
23	nsv1007759	chr1:46248667-46493959	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
24	nsv534945	chr1:46248667-46493959	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
25	nsv916232	chr1:46248686-46493918	Genic enhancers Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
26	nsv437479	chr1:46272879-46411146	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
27	nsv1009527	chr1:46286329-46520127	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
28	nsv546161	chr1:46311275-46498375	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
29	nsv1009474	chr1:46320433-46557734	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
30	nsv1003554	chr1:46331254-46410657	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
31	nsv1005189	chr1:46335186-46949309	Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
32	nsv534946	chr1:46335186-46949309	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
33	esv2761743	chr1:46339858-47026743	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
34	nsv829737	chr1:46352900-46506424	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
35	nsv1000557	chr1:46383876-46591182	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10890376	IPP	Cis_1M	lymphoblastoid	RTeQTL
rs10890376	GPBP1L1	cis	Muscle Skeletal	GTEx

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:46387600-46425000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:46388400-46408200	Weak transcription	Brain Germinal Matrix	brain
3	chr1:46389000-46410400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:46391800-46408000	Weak transcription	Primary B cells from cord blood	blood
5	chr1:46392600-46410400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:46392600-46411200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:46393400-46410600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:46395200-46420600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:46395400-46406800	Weak transcription	Fetal Intestine Small	intestine
10	chr1:46395400-46409000	Weak transcription	Psoas Muscle	Psoas
11	chr1:46395400-46410400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:46395400-46410600	Weak transcription	Small Intestine	intestine
13	chr1:46395400-46411400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:46395400-46412800	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:46395400-46417800	Weak transcription	HSMMtube	muscle
16	chr1:46395400-46419000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr1:46395600-46410600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:46395800-46419200	Weak transcription	Right Ventricle	heart
19	chr1:46396600-46410800	Weak transcription	Fetal Lung	lung
20	chr1:46396800-46407600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:46396800-46410400	Weak transcription	NHLF	lung
22	chr1:46397000-46410400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:46397000-46410400	Weak transcription	Fetal Heart	heart
24	chr1:46398400-46412000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr1:46398600-46408600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr1:46402400-46407600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr1:46402600-46407400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr1:46402800-46410400	Weak transcription	Left Ventricle	heart
29	chr1:46403600-46410600	Weak transcription	Right Atrium	heart
30	chr1:46404800-46417600	Weak transcription	HSMM	muscle
31	chr1:46404800-46419800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr1:46405200-46407600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr1:46405200-46410600	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links