The 2.0 version of rSNPBase

Variant report

Variant rs1612419
Chromosome Location chr1:46546945-46546946
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46501400-46548200 Weak transcription Aorta Aorta
2 chr1:46506000-46549400 Weak transcription Muscle Satellite Cultured Cells --
3 chr1:46510400-46548400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr1:46518200-46551600 Weak transcription Psoas Muscle Psoas
5 chr1:46524800-46547000 Weak transcription Lung lung
6 chr1:46525400-46548800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:46525600-46552600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:46527800-46550400 Weak transcription Fetal Heart heart
9 chr1:46528600-46552200 Weak transcription Thymus Thymus
10 chr1:46528800-46550400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:46529000-46549800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr1:46531800-46547200 Weak transcription Adipose Nuclei Adipose
13 chr1:46532400-46575200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:46532800-46547200 Weak transcription Right Ventricle heart
15 chr1:46533400-46550200 Weak transcription NH-A brain
16 chr1:46535200-46547000 Weak transcription Placenta Placenta
17 chr1:46535200-46547000 Weak transcription Fetal Stomach stomach
18 chr1:46536400-46547400 Weak transcription Fetal Lung lung
19 chr1:46536600-46547000 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:46536600-46547200 Weak transcription iPS-18 Cell Line embryonic stem cell
21 chr1:46537600-46547000 Weak transcription Right Atrium heart
22 chr1:46540400-46595200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:46541200-46595800 Weak transcription Fetal Intestine Small intestine
24 chr1:46541800-46550200 Weak transcription Brain Germinal Matrix brain
25 chr1:46542000-46549800 Weak transcription Hela-S3 cervix
26 chr1:46542200-46547200 Weak transcription Fetal Muscle Leg muscle
27 chr1:46542200-46548800 Weak transcription GM12878-XiMat blood
28 chr1:46542400-46550400 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr1:46543000-46549400 Weak transcription Fetal Brain Female brain
30 chr1:46543000-46564400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr1:46543400-46549400 Weak transcription Dnd41 blood
32 chr1:46543600-46547000 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr1:46543600-46547000 Weak transcription Left Ventricle heart
34 chr1:46543800-46549800 Weak transcription HSMM muscle
35 chr1:46544000-46549800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:46544000-46549800 Weak transcription HMEC breast
37 chr1:46544400-46549400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:46544400-46549600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:46546400-46547000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:46546400-46547200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr1:46546600-46547200 Enhancers HUVEC blood vessel
42 chr1:46546800-46547600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
43 chr1:46546800-46550400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015