The 2.0 version of rSNPBase

Variant report

Variant rs61785613
Chromosome Location chr1:46445871-46445872
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46420600-46455800 Weak transcription HUVEC blood vessel
2 chr1:46425200-46446400 Weak transcription GM12878-XiMat blood
3 chr1:46426800-46460000 Weak transcription Psoas Muscle Psoas
4 chr1:46435200-46461000 Weak transcription K562 blood
5 chr1:46435400-46446200 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr1:46436200-46468800 Weak transcription Stomach Smooth Muscle stomach
7 chr1:46438200-46446400 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr1:46438200-46459600 Weak transcription Right Ventricle heart
9 chr1:46438200-46471400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr1:46438400-46446200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:46438400-46446200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:46438400-46446400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr1:46438400-46446400 Weak transcription Brain Germinal Matrix brain
14 chr1:46438400-46446400 Weak transcription Fetal Stomach stomach
15 chr1:46438400-46447600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
16 chr1:46438400-46448400 Weak transcription Small Intestine intestine
17 chr1:46438400-46453200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:46438400-46453200 Weak transcription Primary T cells from cord blood blood
19 chr1:46438400-46466200 Weak transcription Left Ventricle heart
20 chr1:46438600-46446000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:46438600-46446200 Weak transcription Primary neutrophils fromperipheralblood blood
22 chr1:46438600-46446200 Weak transcription Fetal Muscle Leg muscle
23 chr1:46438600-46463200 Weak transcription Fetal Heart heart
24 chr1:46438600-46464000 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr1:46438600-46464800 Weak transcription Fetal Muscle Trunk muscle
26 chr1:46438600-46468600 Weak transcription Fetal Brain Female brain
27 chr1:46440000-46446200 Weak transcription Primary hematopoietic stem cells blood
28 chr1:46440000-46465000 Weak transcription Dnd41 blood
29 chr1:46440400-46446000 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr1:46440800-46451800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr1:46441000-46463200 Weak transcription HSMM muscle
32 chr1:46441400-46461000 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr1:46441400-46467200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr1:46443400-46446000 Enhancers Fetal Intestine Large intestine
35 chr1:46443800-46446400 Enhancers Rectal Mucosa Donor 31 rectum
36 chr1:46445000-46448400 Weak transcription Fetal Kidney kidney
37 chr1:46445200-46447600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr1:46445200-46448800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:46445400-46448000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:46445400-46448000 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr1:46445400-46453800 Weak transcription Muscle Satellite Cultured Cells --
42 chr1:46445600-46446200 Weak transcription Liver Liver
43 chr1:46445600-46448000 Weak transcription Duodenum Mucosa Duodenum
44 chr1:46445600-46467800 Weak transcription Colonic Mucosa Colon
45 chr1:46445600-46472000 Weak transcription A549 lung
46 chr1:46445600-46475600 Weak transcription Stomach Mucosa stomach
47 chr1:46445800-46446200 Weak transcription Fetal Intestine Small intestine
48 chr1:46445800-46447000 Weak transcription HepG2 liver
49 chr1:46445800-46450000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015