The 2.0 version of rSNPBase

Variant report

Variant rs4660336
Chromosome Location chr1:46487976-46487977
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46461400-46488000 Weak transcription Muscle Satellite Cultured Cells --
2 chr1:46469800-46488000 Weak transcription Esophagus oesophagus
3 chr1:46470600-46489800 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr1:46473000-46500400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr1:46473600-46502600 Weak transcription Primary T cells fromperipheralblood blood
6 chr1:46474400-46502600 Weak transcription Primary B cells from peripheral blood blood
7 chr1:46474600-46488400 Weak transcription Primary T helper cells fromperipheralblood blood
8 chr1:46474600-46490400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr1:46474600-46496600 Weak transcription Fetal Thymus thymus
10 chr1:46474800-46488200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr1:46475000-46488200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr1:46475600-46525000 Weak transcription Fetal Kidney kidney
13 chr1:46476200-46488000 Weak transcription NHDF-Ad bronchial
14 chr1:46476200-46488200 Weak transcription Hela-S3 cervix
15 chr1:46476200-46502600 Weak transcription Stomach Mucosa stomach
16 chr1:46476400-46488000 Weak transcription Pancreas Pancrea
17 chr1:46476400-46495200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr1:46476600-46515800 Weak transcription Primary T regulatory cells fromperipheralblood blood
19 chr1:46477200-46488400 Weak transcription Fetal Brain Male brain
20 chr1:46477200-46488400 Weak transcription GM12878-XiMat blood
21 chr1:46477400-46488000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:46477400-46488000 Weak transcription Primary T cells from cord blood blood
23 chr1:46477400-46488200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:46477400-46489800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:46477400-46493800 Weak transcription Colon Smooth Muscle Colon
26 chr1:46477400-46496000 Weak transcription Small Intestine intestine
27 chr1:46477600-46488000 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr1:46483600-46489200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:46484600-46492000 Strong transcription Brain Germinal Matrix brain
30 chr1:46484800-46488400 Genic enhancers Skeletal Muscle Male skeletal muscle
31 chr1:46484800-46502000 Strong transcription Fetal Intestine Small intestine
32 chr1:46485000-46502000 Strong transcription Fetal Stomach stomach
33 chr1:46485400-46491800 Strong transcription Fetal Intestine Large intestine
34 chr1:46485600-46488800 Genic enhancers Fetal Muscle Leg muscle
35 chr1:46485800-46488600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr1:46485800-46503000 Weak transcription ES-WA7 Cell Line embryonic stem cell
37 chr1:46486200-46488800 Weak transcription Psoas Muscle Psoas
38 chr1:46486200-46489600 Strong transcription Right Ventricle heart
39 chr1:46486400-46491600 Strong transcription Placenta Amnion Placenta Amnion
40 chr1:46486600-46490000 Strong transcription Aorta Aorta
41 chr1:46486600-46491000 Strong transcription Duodenum Mucosa Duodenum
42 chr1:46486600-46491800 Strong transcription H1 Cell Line embryonic stem cell
43 chr1:46486600-46492200 Strong transcription Rectal Mucosa Donor 29 rectum
44 chr1:46486800-46490200 Strong transcription Breast Myoepithelial Primary Cells Breast
45 chr1:46486800-46490200 Strong transcription HepG2 liver
46 chr1:46486800-46491800 Strong transcription Stomach Smooth Muscle stomach
47 chr1:46486800-46502400 Strong transcription Primary neutrophils fromperipheralblood blood
48 chr1:46487000-46489200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr1:46487000-46489600 Strong transcription HUES6 Cell Line embryonic stem cell
50 chr1:46487000-46490200 Strong transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015