The 2.0 version of rSNPBase

Variant report

Variant rs4489497
Chromosome Location chr1:46438698-46438699
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46420200-46440200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr1:46420400-46443000 Weak transcription Fetal Lung lung
3 chr1:46420600-46443000 Weak transcription Adipose Nuclei Adipose
4 chr1:46420600-46455800 Weak transcription HUVEC blood vessel
5 chr1:46420800-46439800 Weak transcription iPS-20b Cell Line embryonic stem cell
6 chr1:46420800-46439800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr1:46420800-46444600 Weak transcription Rectal Smooth Muscle rectum
8 chr1:46420800-46445200 Weak transcription Pancreas Pancrea
9 chr1:46423600-46440400 Weak transcription HMEC breast
10 chr1:46423800-46439400 Weak transcription Thymus Thymus
11 chr1:46425200-46444800 Weak transcription Fetal Kidney kidney
12 chr1:46425200-46444800 Weak transcription NH-A brain
13 chr1:46425200-46446400 Weak transcription GM12878-XiMat blood
14 chr1:46426800-46441200 Weak transcription Primary B cells from cord blood blood
15 chr1:46426800-46460000 Weak transcription Psoas Muscle Psoas
16 chr1:46427000-46440600 Weak transcription Liver Liver
17 chr1:46435200-46440000 Weak transcription Osteobl bone
18 chr1:46435200-46444400 Weak transcription Muscle Satellite Cultured Cells --
19 chr1:46435200-46444800 Weak transcription NHDF-Ad bronchial
20 chr1:46435200-46461000 Weak transcription K562 blood
21 chr1:46435400-46446200 Weak transcription iPS-15b Cell Line embryonic stem cell
22 chr1:46435800-46439200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr1:46435800-46445000 Weak transcription NHLF lung
24 chr1:46436000-46444400 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr1:46436200-46444200 Weak transcription Hela-S3 cervix
26 chr1:46436200-46468800 Weak transcription Stomach Smooth Muscle stomach
27 chr1:46436600-46438800 Strong transcription HepG2 liver
28 chr1:46436800-46439000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:46436800-46439200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr1:46437000-46438800 Strong transcription HSMM muscle
31 chr1:46437200-46441000 Weak transcription Ovary ovary
32 chr1:46437200-46442400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr1:46437400-46440000 Strong transcription Primary hematopoietic stem cells blood
34 chr1:46437400-46440800 Enhancers Rectal Mucosa Donor 29 rectum
35 chr1:46437600-46438800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr1:46437800-46439800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr1:46437800-46441600 Enhancers Stomach Mucosa stomach
38 chr1:46438000-46439200 Strong transcription Skeletal Muscle Female skeletal muscle
39 chr1:46438000-46439600 Weak transcription H1 Cell Line embryonic stem cell
40 chr1:46438000-46439600 Weak transcription H9 Cell Line embryonic stem cell
41 chr1:46438200-46439400 Weak transcription Colonic Mucosa Colon
42 chr1:46438200-46439400 Weak transcription Dnd41 blood
43 chr1:46438200-46440200 Weak transcription NHEK skin
44 chr1:46438200-46440600 Weak transcription Esophagus oesophagus
45 chr1:46438200-46441400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr1:46438200-46442400 Enhancers Fetal Intestine Small intestine
47 chr1:46438200-46445000 Weak transcription HSMMtube muscle
48 chr1:46438200-46446400 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr1:46438200-46459600 Weak transcription Right Ventricle heart
50 chr1:46438200-46471400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015