Variant report

Variant	rs1768802
Chromosome Location	chr1:46547868-46547869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:46546706..46549522-chr1:46637741..46639306,2	MCF-7	breast:

Extended variants
information (count: 191 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs10732844	1.00[CEU][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap]
rs10789478	0.95[CEU][hapmap]
rs10789484	0.81[EUR][1000 genomes]
rs10789485	1.00[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs10789486	0.84[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes]
rs1085240	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1085243	0.92[CHD][hapmap]
rs10890365	0.84[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap]
rs10890370	1.00[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs10890371	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap]
rs10890372	1.00[CEU][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs10890373	1.00[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs10890374	0.81[EUR][1000 genomes]
rs10890376	0.80[EUR][1000 genomes]
rs10890377	0.80[EUR][1000 genomes]
rs10890378	0.84[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes]
rs10890380	1.00[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs10890381	1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs10890382	1.00[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs11211217	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs11211219	1.00[CEU][hapmap]
rs11211223	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs11211228	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.81[EUR][1000 genomes]
rs11211229	0.81[EUR][1000 genomes]
rs11211232	1.00[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs11211235	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes]
rs11211236	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes]
rs11211237	0.91[CEU][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes]
rs11211238	0.85[EUR][1000 genomes]
rs11211239	0.84[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs11211243	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs11211244	0.86[EUR][1000 genomes]
rs11211248	0.84[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes]
rs11211257	0.90[ASN][1000 genomes]
rs11579634	0.82[CHD][hapmap]
rs11810993	0.82[CHD][hapmap]
rs12022335	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap]
rs12067716	0.84[EUR][1000 genomes]
rs12077546	0.84[EUR][1000 genomes]
rs12090501	0.85[ASN][1000 genomes]
rs12097799	0.85[EUR][1000 genomes]
rs12124291	0.84[EUR][1000 genomes]
rs12133129	0.84[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap]
rs12403666	0.84[EUR][1000 genomes]
rs1416706	0.85[CHB][hapmap]
rs1588663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1612419	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613296	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1622208	1.00[CEU][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1707302	0.88[ASW][hapmap];0.86[CHB][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap]
rs1707303	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1707317	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1707321	0.90[CHD][hapmap]
rs1707322	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1707336	0.82[CHD][hapmap]
rs1707337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1707338	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1707339	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1707340	0.92[CHD][hapmap]
rs1768800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1768801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1768807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1768808	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs1768815	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1768816	0.92[CHD][hapmap]
rs1768817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1768818	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275426	0.82[CHD][hapmap]
rs2297883	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2458400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2669156	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34446427	0.82[EUR][1000 genomes]
rs35018217	0.82[EUR][1000 genomes]
rs3922886	0.87[EUR][1000 genomes]
rs3922887	1.00[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs4073846	0.82[CHD][hapmap]
rs4073847	0.84[ASW][hapmap];1.00[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes]
rs4074225	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs4076006	0.82[CHD][hapmap]
rs4134387	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs4454479	0.84[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes]
rs4459051	0.85[EUR][1000 genomes]
rs4460583	0.85[EUR][1000 genomes]
rs4489497	0.84[EUR][1000 genomes]
rs4539075	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs4660328	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes]
rs4660331	0.86[EUR][1000 genomes]
rs4660332	0.86[EUR][1000 genomes]
rs4660334	0.84[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs4660335	0.91[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs4660336	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4660341	0.90[ASN][1000 genomes]
rs4660896	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap]
rs4660900	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs4660903	0.86[EUR][1000 genomes]
rs4660904	0.86[EUR][1000 genomes]
rs4660905	0.88[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs4660906	0.87[EUR][1000 genomes]
rs4660910	0.82[CHB][hapmap]
rs61785584	0.82[EUR][1000 genomes]
rs61785613	0.84[EUR][1000 genomes]
rs61785614	0.85[EUR][1000 genomes]
rs6429588	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs6657720	0.91[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs6661500	1.00[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs6666763	0.82[EUR][1000 genomes]
rs6671754	0.82[EUR][1000 genomes]
rs6675259	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6677777	0.96[CEU][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs6681068	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs6686134	0.82[CHD][hapmap]
rs6687301	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap]
rs7512395	1.00[CEU][hapmap]
rs7517560	0.81[EUR][1000 genomes]
rs7526369	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs7527079	0.82[EUR][1000 genomes]
rs7527244	1.00[CEU][hapmap]
rs7527298	0.81[EUR][1000 genomes]
rs7532204	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7534331	0.83[EUR][1000 genomes]
rs7538978	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs785462	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs785463	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs785465	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs785466	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs785467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs785468	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs785469	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs785470	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs785477	0.86[EUR][1000 genomes]
rs785478	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs785480	0.84[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs785481	0.90[CHD][hapmap]
rs785483	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs785484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs785486	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs785490	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs785493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs785494	0.82[CHB][hapmap]
rs785495	0.92[CHD][hapmap]
rs785496	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs785497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs785498	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs785499	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs785500	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs785501	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs785503	0.92[CHD][hapmap]
rs785504	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs785506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs785507	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs785508	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs785509	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs785510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs785512	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs785513	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs785516	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs785517	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs785518	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs785519	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs785520	0.92[CHD][hapmap]
rs796773	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs809774	0.82[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs814168	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs925524	0.83[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9429095	0.86[CHB][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap]
rs9429186	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs946524	0.84[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs946525	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs946527	0.84[ASW][hapmap];0.96[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs946528	0.81[JPT][hapmap];0.81[YRI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9787412	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap]
rs9793167	0.85[EUR][1000 genomes]
rs9803784	0.81[EUR][1000 genomes]
rs9919275	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
2	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
3	nsv871928	chr1:46024701-46609736	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
4	nsv1003517	chr1:46244432-46609881	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv1009474	chr1:46320433-46557734	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1005189	chr1:46335186-46949309	Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
7	nsv534946	chr1:46335186-46949309	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
8	esv2761743	chr1:46339858-47026743	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv1000557	chr1:46383876-46591182	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	esv2754420	chr1:46461580-46635180	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv1007750	chr1:46471293-46552564	Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
12	nsv1006747	chr1:46476089-46655484	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
13	nsv534947	chr1:46476089-46655484	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
14	nsv1012418	chr1:46544842-46619890	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
15	nsv534948	chr1:46544842-46619890	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
16	nsv1006530	chr1:46544842-46655484	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
17	nsv534949	chr1:46544842-46655484	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1768802	IPP	Cis_1M	lymphoblastoid	RTeQTL
rs1768802	MIA3	trans	cerebellum	SCAN
rs1768802	ELOVL1	cis	parietal	SCAN
rs1768802	GPBP1L1	cis	Muscle Skeletal	GTEx
rs1768802	IPP	cis	lymphoblastoid	seeQTL
rs1768802	TAL1	cis	cerebellum	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:46501400-46548200	Weak transcription	Aorta	Aorta
2	chr1:46506000-46549400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:46510400-46548400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:46518200-46551600	Weak transcription	Psoas Muscle	Psoas
5	chr1:46525400-46548800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:46525600-46552600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:46527800-46550400	Weak transcription	Fetal Heart	heart
8	chr1:46528600-46552200	Weak transcription	Thymus	Thymus
9	chr1:46528800-46550400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:46529000-46549800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:46532400-46575200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:46533400-46550200	Weak transcription	NH-A	brain
13	chr1:46540400-46595200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:46541200-46595800	Weak transcription	Fetal Intestine Small	intestine
15	chr1:46541800-46550200	Weak transcription	Brain Germinal Matrix	brain
16	chr1:46542000-46549800	Weak transcription	Hela-S3	cervix
17	chr1:46542200-46548800	Weak transcription	GM12878-XiMat	blood
18	chr1:46542400-46550400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:46543000-46549400	Weak transcription	Fetal Brain Female	brain
20	chr1:46543000-46564400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:46543400-46549400	Weak transcription	Dnd41	blood
22	chr1:46543800-46549800	Weak transcription	HSMM	muscle
23	chr1:46544000-46549800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:46544000-46549800	Weak transcription	HMEC	breast
25	chr1:46544400-46549400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:46544400-46549600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:46546800-46550400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:46547000-46548200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr1:46547000-46548200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:46547200-46548000	Enhancers	Adipose Nuclei	Adipose
31	chr1:46547200-46549800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:46547400-46552000	Weak transcription	Left Ventricle	heart
33	chr1:46547400-46552400	Weak transcription	Right Atrium	heart
34	chr1:46547400-46552400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr1:46547400-46554200	Weak transcription	Fetal Stomach	stomach
36	chr1:46547600-46548200	Enhancers	HUVEC	blood vessel
37	chr1:46547600-46550200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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