Variant report

Variant	rs786792
Chromosome Location	chr10:48628441-48628442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10888204	0.80[EUR][1000 genomes]
rs11204275	0.83[EUR][1000 genomes]
rs1452290	0.87[EUR][1000 genomes]
rs1584731	0.85[EUR][1000 genomes]
rs2601115	0.88[ASN][1000 genomes]
rs4489675	0.81[EUR][1000 genomes]
rs57691103	0.81[EUR][1000 genomes]
rs58376504	0.81[EUR][1000 genomes]
rs61442046	0.81[EUR][1000 genomes]
rs786773	0.89[EUR][1000 genomes]
rs786776	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs786777	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs786792	ZNF22	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48623200-48629200	Weak transcription	Aorta	Aorta
2	chr10:48625800-48649400	Weak transcription	Thymus	Thymus
3	chr10:48627800-48629000	Enhancers	Primary hematopoietic stem cells	blood
4	chr10:48627800-48636400	Enhancers	Fetal Lung	lung
5	chr10:48628000-48628600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:48628400-48629600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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