Variant report

Variant	rs58376504
Chromosome Location	chr10:48559440-48559441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10888204	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11204275	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12218639	0.83[EUR][1000 genomes]
rs1452290	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1584731	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4306241	0.88[EUR][1000 genomes]
rs4336968	0.91[ASN][1000 genomes]
rs4489675	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57691103	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61442046	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61843411	0.91[EUR][1000 genomes]
rs61843412	0.91[EUR][1000 genomes]
rs72642126	0.91[EUR][1000 genomes]
rs786773	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs786776	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs786777	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs786792	0.81[EUR][1000 genomes]
rs9421840	0.81[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48540800-48562800	Weak transcription	Right Atrium	heart
2	chr10:48551800-48563200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:48555800-48560200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:48557000-48560800	Weak transcription	Fetal Lung	lung
5	chr10:48557000-48561400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:48557200-48562600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:48558200-48561000	Weak transcription	Fetal Stomach	stomach
8	chr10:48558200-48562600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links