Variant report

Variant	rs4306241
Chromosome Location	chr10:48555182-48555183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10888204	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11204275	0.87[EUR][1000 genomes]
rs1452290	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1584731	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4336968	0.88[EUR][1000 genomes]
rs4489675	0.90[EUR][1000 genomes]
rs4922523	0.82[EUR][1000 genomes]
rs57691103	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58376504	0.88[EUR][1000 genomes]
rs61442046	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61843411	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61843412	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72642126	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs786777	0.80[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4306241	MARCH8	cis	cerebellum	SCAN
rs4306241	ZNF22	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48540800-48562800	Weak transcription	Right Atrium	heart
2	chr10:48544000-48557400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:48551400-48557000	Weak transcription	Primary T cells from cord blood	blood
4	chr10:48551800-48563200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:48554200-48556200	Enhancers	Esophagus	oesophagus
6	chr10:48554400-48555600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:48554400-48556200	Enhancers	Fetal Thymus	thymus
8	chr10:48554400-48556200	Enhancers	Thymus	Thymus
9	chr10:48554400-48556400	Enhancers	Pancreas	Pancrea
10	chr10:48554600-48555200	Enhancers	NHEK	skin
11	chr10:48554600-48555400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:48554800-48555600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:48554800-48556200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:48555000-48556200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:48555000-48556200	Enhancers	Stomach Smooth Muscle	stomach
16	chr10:48555000-48556400	Enhancers	HMEC	breast
17	chr10:48555000-48557000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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