Variant report

Variant	rs1452290
Chromosome Location	chr10:48592208-48592209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:48554599..48557060-chr10:48591038..48592546,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10888204	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11204275	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11204279	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12218639	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1584730	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584731	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2257629	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2790957	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147455	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4306241	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4489675	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57691103	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58376504	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61442046	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61843411	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61843412	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61843447	0.93[ASN][1000 genomes]
rs72642126	0.89[EUR][1000 genomes]
rs786773	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs786776	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs786777	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs786792	0.87[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48575600-48598200	Weak transcription	NH-A	brain
2	chr10:48589600-48592400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:48591400-48592600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr10:48591400-48594000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:48591600-48592400	Enhancers	Osteobl	bone
6	chr10:48591600-48593200	Enhancers	NHEK	skin
7	chr10:48591800-48593000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:48591800-48593400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:48592000-48593000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:48592000-48593000	Enhancers	NHDF-Ad	bronchial
11	chr10:48592000-48593200	Enhancers	HMEC	breast
12	chr10:48592000-48593600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:48592200-48593000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:48592200-48593200	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links