Variant report

Variant	rs2257629
Chromosome Location	chr10:48594682-48594683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10888204	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11204275	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11204279	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12218639	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1452290	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1584730	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1584731	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2790957	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147455	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4336968	0.86[EUR][1000 genomes]
rs4489675	0.80[EUR][1000 genomes]
rs4922523	0.81[EUR][1000 genomes]
rs57691103	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61442046	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61843447	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs786773	0.83[ASN][1000 genomes]
rs786776	0.87[ASN][1000 genomes]
rs786777	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:48575600-48598200	Weak transcription	NH-A	brain
2	chr10:48592400-48598200	Weak transcription	Osteobl	bone
3	chr10:48592400-48599000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:48593000-48595000	Enhancers	Thymus	Thymus
5	chr10:48593600-48595000	Enhancers	Fetal Thymus	thymus
6	chr10:48593600-48599800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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