Variant report

Variant	rs7870160
Chromosome Location	chr9:97712531-97712532
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97708335..97709871-chr9:97710175..97712556,2	MCF-7	breast:
2	chr9:97687410..97690571-chr9:97710837..97713862,3	MCF-7	breast:
3	chr9:97711544..97713336-chr9:97713597..97715255,2	MCF-7	breast:
4	chr9:97712288..97714275-chr9:97755356..97757611,2	MCF-7	breast:
5	chr9:97711965..97713605-chr9:97715460..97717301,2	MCF-7	breast:
6	chr9:97712076..97713650-chr9:97766495..97769032,2	MCF-7	breast:
7	chr9:97711689..97714649-chr9:97733547..97735329,2	MCF-7	breast:
8	chr9:97711176..97714022-chr9:97766697..97771903,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10217143	0.85[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs10761361	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs10821410	0.86[JPT][hapmap]
rs10821413	0.89[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10993344	0.84[MKK][hapmap];0.84[TSI][hapmap]
rs10993387	0.80[JPT][hapmap];0.81[AMR][1000 genomes]
rs12338409	0.96[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.94[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12338859	0.85[CEU][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12344211	0.96[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.94[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12347649	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16911824	0.88[YRI][hapmap]
rs1867102	0.81[TSI][hapmap]
rs4743974	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744412	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7862219	0.81[CEU][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs9802263	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1045849	chr9:97688810-97741336	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97682000-97713800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:97685200-97714600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:97687000-97714000	Weak transcription	Thymus	Thymus
5	chr9:97692200-97713000	Weak transcription	Primary T cells from cord blood	blood
6	chr9:97693400-97712600	Weak transcription	Gastric	stomach
7	chr9:97700200-97714600	Weak transcription	Fetal Stomach	stomach
8	chr9:97700200-97718600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:97703800-97713000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:97704000-97712600	Weak transcription	Lung	lung
11	chr9:97704000-97713000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr9:97704400-97712800	Weak transcription	Fetal Lung	lung
13	chr9:97704800-97712800	Weak transcription	HUVEC	blood vessel
14	chr9:97707000-97713400	Weak transcription	Small Intestine	intestine
15	chr9:97707800-97713200	Enhancers	Aorta	Aorta
16	chr9:97708200-97713200	Enhancers	A549	lung
17	chr9:97708400-97712600	Weak transcription	Fetal Intestine Small	intestine
18	chr9:97708400-97712600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:97708400-97712600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:97708800-97712600	Weak transcription	Stomach Mucosa	stomach
21	chr9:97708800-97713000	Weak transcription	Colonic Mucosa	Colon
22	chr9:97708800-97713000	Weak transcription	Fetal Intestine Large	intestine
23	chr9:97708800-97713000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr9:97708800-97713200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:97708800-97713200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr9:97708800-97714000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:97708800-97715000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:97708800-97720000	Weak transcription	K562	blood
29	chr9:97709000-97712600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:97709000-97712600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:97709000-97712800	Weak transcription	Colon Smooth Muscle	Colon
32	chr9:97709000-97713000	Weak transcription	NH-A	brain
33	chr9:97709200-97712600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr9:97709200-97713400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr9:97709200-97730400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr9:97709600-97713200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:97709600-97713600	Enhancers	H1 Cell Line	embryonic stem cell
38	chr9:97709800-97713000	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr9:97709800-97713800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr9:97709800-97713800	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr9:97710000-97713600	Enhancers	Brain Angular Gyrus	brain
42	chr9:97710000-97713600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr9:97710000-97715200	Enhancers	Ovary	ovary
44	chr9:97710000-97715600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr9:97710200-97712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr9:97710400-97715000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:97710600-97713400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr9:97710600-97716000	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr9:97710600-97716200	Enhancers	Left Ventricle	heart
50	chr9:97710600-97716800	Enhancers	Placenta	Placenta

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