Variant report

Variant	rs7862219
Chromosome Location	chr9:97652230-97652231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97649888..97652305-chr9:97683979..97686393,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10081676	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10217143	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10739983	0.81[EUR][1000 genomes]
rs10761361	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821392	0.81[CEU][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs10821393	0.81[EUR][1000 genomes]
rs10821398	0.85[CEU][hapmap];0.95[YRI][hapmap]
rs10821404	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10821410	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821413	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993344	0.81[CEU][hapmap];0.81[CHB][hapmap];0.98[GIH][hapmap]
rs10993387	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11788697	0.83[EUR][1000 genomes]
rs12338409	0.85[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12338859	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12344211	0.85[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12347649	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1867102	0.94[ASW][hapmap];0.93[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2031698	0.81[EUR][1000 genomes]
rs4743969	0.94[ASW][hapmap];0.85[CEU][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4743974	0.82[AMR][1000 genomes]
rs4744386	0.94[ASW][hapmap];0.85[CEU][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4744411	0.84[CHB][hapmap]
rs4744412	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7027708	0.81[CEU][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs7847277	0.88[ASW][hapmap];0.81[CEU][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];0.99[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7848139	0.88[ASW][hapmap];0.81[CEU][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.91[YRI][hapmap];0.80[EUR][1000 genomes]
rs7870160	0.81[CEU][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs9802263	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
2	chr9:97638600-97661800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:97645600-97653200	Weak transcription	Fetal Brain Male	brain
4	chr9:97648000-97652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:97648000-97652800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:97648000-97657400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:97648400-97653000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:97648400-97656400	Weak transcription	NH-A	brain
9	chr9:97648400-97657400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:97648600-97653400	Weak transcription	Brain Hippocampus Middle	brain
11	chr9:97648600-97654600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:97648600-97654600	Weak transcription	Pancreas	Pancrea
13	chr9:97648600-97654800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:97648600-97656000	Weak transcription	Liver	Liver
15	chr9:97648800-97652600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:97648800-97652800	Weak transcription	Fetal Lung	lung
17	chr9:97648800-97653200	Weak transcription	HSMM	muscle
18	chr9:97650400-97654600	Weak transcription	Osteobl	bone
19	chr9:97650400-97655800	Weak transcription	Stomach Mucosa	stomach
20	chr9:97650600-97652800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr9:97650600-97654200	ZNF genes & repeats	A549	lung
22	chr9:97650600-97656000	Weak transcription	NHLF	lung
23	chr9:97651000-97655400	Weak transcription	Hela-S3	cervix
24	chr9:97651800-97654200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:97652000-97652400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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