Variant report

Variant	rs4744386
Chromosome Location	chr9:97614641-97614642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97601155..97603173-chr9:97612661..97615155,2	MCF-7	breast:
2	chr9:97609417..97611385-chr9:97614090..97618041,3	MCF-7	breast:
3	chr9:97609861..97611961-chr9:97613385..97615426,2	MCF-7	breast:
4	chr9:97613776..97615491-chr9:97629001..97631689,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf118-1	chr9:97608191-97616025	refGeneNc_2054_NR_023390

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10081676	0.87[EUR][1000 genomes]
rs10217143	0.81[CEU][hapmap];0.98[GIH][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs10739982	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10739983	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10761351	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10761361	0.85[CEU][hapmap];0.80[CHB][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10821390	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821392	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821393	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821398	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10821404	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821410	0.81[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs10821413	0.86[YRI][hapmap]
rs10993344	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10993387	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs11788697	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12338409	0.88[MKK][hapmap];0.84[TSI][hapmap]
rs12338859	0.94[ASW][hapmap];0.81[CEU][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs12344211	0.88[MKK][hapmap];0.84[TSI][hapmap]
rs12347649	0.82[AFR][1000 genomes]
rs1867102	1.00[ASW][hapmap];0.93[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2031698	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4743969	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744375	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7022894	0.87[EUR][1000 genomes]
rs7027708	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7847277	0.94[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7848139	0.94[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7862219	0.94[ASW][hapmap];0.85[CEU][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
3	chr9:97590600-97616000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:97602400-97616000	Weak transcription	Fetal Intestine Small	intestine
5	chr9:97602400-97620200	Weak transcription	GM12878-XiMat	blood
6	chr9:97602400-97622200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr9:97603200-97624600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:97605600-97622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:97605800-97621800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:97605800-97626000	Weak transcription	Right Atrium	heart
11	chr9:97609800-97618400	Weak transcription	Lung	lung
12	chr9:97609800-97620600	Weak transcription	Fetal Stomach	stomach
13	chr9:97609800-97623800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr9:97610200-97623200	Weak transcription	Fetal Intestine Large	intestine
15	chr9:97610200-97625800	Weak transcription	Right Ventricle	heart
16	chr9:97610400-97615600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:97610400-97615800	Weak transcription	Stomach Mucosa	stomach
18	chr9:97610400-97615800	Weak transcription	HMEC	breast
19	chr9:97610400-97615800	Weak transcription	NHEK	skin
20	chr9:97610400-97620400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:97610400-97622400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:97610400-97623600	Weak transcription	Fetal Kidney	kidney
23	chr9:97610600-97615800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:97610600-97616000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:97610600-97616000	Weak transcription	NH-A	brain
26	chr9:97610600-97616000	Weak transcription	Osteobl	bone
27	chr9:97610600-97620400	Weak transcription	Fetal Muscle Leg	muscle
28	chr9:97610600-97622200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:97610600-97623000	Weak transcription	NHLF	lung
30	chr9:97611000-97615800	Weak transcription	HSMM	muscle
31	chr9:97611200-97622600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr9:97611400-97620800	Weak transcription	Placenta	Placenta
33	chr9:97612000-97627600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr9:97612600-97614800	Strong transcription	Primary T cells from cord blood	blood
35	chr9:97612600-97614800	Enhancers	Brain Hippocampus Middle	brain
36	chr9:97612600-97614800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr9:97612600-97615000	Enhancers	NHDF-Ad	bronchial
38	chr9:97612800-97626200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:97613200-97614800	Enhancers	Esophagus	oesophagus
40	chr9:97613200-97615000	Enhancers	Psoas Muscle	Psoas
41	chr9:97613200-97615800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr9:97613200-97616200	Weak transcription	Brain Anterior Caudate	brain
43	chr9:97613600-97614800	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr9:97613600-97615000	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr9:97613600-97616000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:97613600-97616000	Weak transcription	Brain Angular Gyrus	brain
47	chr9:97613600-97616000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr9:97613800-97617200	Enhancers	HepG2	liver
49	chr9:97614000-97616000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr9:97614000-97627800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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