Variant report

Variant	rs10761361
Chromosome Location	chr9:97644542-97644543
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97579045..97581444-chr9:97644293..97648187,3	MCF-7	breast:
2	chr9:97643198..97646263-chr9:97646433..97648842,3	MCF-7	breast:
3	chr9:97622637..97624202-chr9:97643913..97646583,2	MCF-7	breast:
4	chr9:97633916..97636147-chr9:97641921..97644696,2	MCF-7	breast:
5	chr9:97640769..97645412-chr9:97646279..97650520,7	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10081676	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10217143	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739983	0.81[EUR][1000 genomes]
rs10821392	0.82[CEU][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs10821393	0.81[EUR][1000 genomes]
rs10821398	0.85[CEU][hapmap];0.95[YRI][hapmap]
rs10821404	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10821410	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821413	0.93[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10993344	0.81[CEU][hapmap]
rs10993387	0.96[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993398	0.84[CHB][hapmap]
rs11788697	0.83[EUR][1000 genomes]
rs12338409	0.85[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12338859	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12344211	0.85[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12347649	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1867102	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2031698	0.81[EUR][1000 genomes]
rs4743969	0.85[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4743974	0.82[AMR][1000 genomes]
rs4744386	0.85[CEU][hapmap];0.80[CHB][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4744411	0.84[CHB][hapmap]
rs4744412	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7027708	0.82[CEU][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs7847277	0.81[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7848139	0.81[CEU][hapmap];0.90[YRI][hapmap];0.80[EUR][1000 genomes]
rs7862219	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7865239	0.84[CHB][hapmap]
rs7870160	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs9802263	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97630000-97645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:97631800-97645600	Weak transcription	Small Intestine	intestine
3	chr9:97632000-97646000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:97633400-97646800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
6	chr9:97634000-97646600	Weak transcription	Spleen	Spleen
7	chr9:97634000-97646800	Weak transcription	Stomach Mucosa	stomach
8	chr9:97635200-97645600	Weak transcription	Placenta	Placenta
9	chr9:97637800-97645200	Weak transcription	NH-A	brain
10	chr9:97638400-97647600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:97638600-97661800	Weak transcription	Fetal Intestine Small	intestine
12	chr9:97640000-97644600	Enhancers	HSMM	muscle
13	chr9:97640400-97646400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr9:97640600-97645400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:97640600-97645400	Weak transcription	Brain Substantia Nigra	brain
16	chr9:97640800-97645600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr9:97641000-97645600	Weak transcription	Brain Anterior Caudate	brain
18	chr9:97641000-97647400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:97641000-97648600	Enhancers	Fetal Heart	heart
20	chr9:97641000-97650000	Weak transcription	Brain Angular Gyrus	brain
21	chr9:97641200-97647800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr9:97641400-97647400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:97641400-97647400	Weak transcription	Psoas Muscle	Psoas
24	chr9:97641600-97646600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:97641800-97647400	Weak transcription	Hela-S3	cervix
26	chr9:97641800-97647400	Weak transcription	K562	blood
27	chr9:97642600-97646400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:97642800-97644600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr9:97642800-97644800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:97642800-97644800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:97642800-97646200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:97642800-97648800	Enhancers	Fetal Lung	lung
33	chr9:97643000-97646800	Enhancers	A549	lung
34	chr9:97643200-97644600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr9:97643200-97644600	Enhancers	Placenta Amnion	Placenta Amnion
36	chr9:97643200-97646000	Enhancers	Fetal Kidney	kidney
37	chr9:97643400-97645000	Enhancers	GM12878-XiMat	blood
38	chr9:97643400-97646400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:97643600-97646400	Enhancers	Aorta	Aorta
40	chr9:97643600-97647600	Weak transcription	NHEK	skin
41	chr9:97643800-97645400	Enhancers	Primary B cells from peripheral blood	blood
42	chr9:97643800-97645800	Enhancers	Primary hematopoietic stem cells	blood
43	chr9:97643800-97647400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:97643800-97647400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:97644000-97644600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:97644000-97645000	Enhancers	Primary B cells from cord blood	blood
47	chr9:97644000-97647400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:97644000-97647400	Weak transcription	HMEC	breast
49	chr9:97644200-97645400	Weak transcription	Osteobl	bone
50	chr9:97644400-97644800	Weak transcription	Left Ventricle	heart

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