Variant report

Variant	rs1867102
Chromosome Location	chr9:97627767-97627768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97627040..97629485-chr9:97753881..97755520,2	MCF-7	breast:
2	chr9:97627475..97632236-chr9:97687625..97689828,4	MCF-7	breast:
3	chr9:97619538..97621584-chr9:97627252..97629069,2	K562	blood:
4	chr9:97626847..97629665-chr9:97678256..97681885,4	MCF-7	breast:
5	chr9:97625448..97628270-chr9:97766242..97768114,2	MCF-7	breast:
6	chr9:97626084..97627897-chr9:97790026..97791698,2	MCF-7	breast:
7	chr9:97621507..97626749-chr9:97626893..97633201,8	MCF-7	breast:
8	chr9:97580323..97584825-chr9:97627426..97631044,6	MCF-7	breast:
9	chr9:97626345..97628625-chr9:97631540..97633736,2	K562	blood:
10	chr9:97624375..97626287-chr9:97627314..97629648,2	K562	blood:
11	chr9:97626134..97628785-chr9:97822106..97824115,2	K562	blood:
12	chr9:97619201..97621520-chr9:97626417..97628990,2	K562	blood:
13	chr9:97626766..97634519-chr9:97675095..97684236,17	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10081676	0.88[EUR][1000 genomes]
rs10217143	0.88[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.83[MKK][hapmap];0.96[TSI][hapmap];0.83[YRI][hapmap];0.89[EUR][1000 genomes]
rs10739982	0.82[EUR][1000 genomes]
rs10739983	0.84[EUR][1000 genomes]
rs10761361	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10821390	0.85[CEU][hapmap]
rs10821392	0.89[CEU][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs10821393	0.84[EUR][1000 genomes]
rs10821398	0.93[CEU][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10821404	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821410	0.89[CEU][hapmap];0.95[CHB][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes]
rs10821413	0.85[CEU][hapmap];0.84[CHB][hapmap];0.91[YRI][hapmap]
rs10993344	0.89[CEU][hapmap];0.80[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap]
rs10993387	0.89[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes]
rs11788697	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12338409	0.80[CHB][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap]
rs12338859	0.94[ASW][hapmap];0.89[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12344211	0.80[CHB][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap]
rs12347649	0.82[EUR][1000 genomes]
rs2031698	0.84[EUR][1000 genomes]
rs4743969	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4744375	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744386	1.00[ASW][hapmap];0.93[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7027708	0.89[CEU][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs7847277	0.94[ASW][hapmap];0.89[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7848139	0.94[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs7862219	0.94[ASW][hapmap];0.93[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7870160	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97614000-97627800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:97616600-97629600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:97618600-97628400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:97620600-97627800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:97622600-97628200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:97622600-97628600	Enhancers	Primary hematopoietic stem cells	blood
7	chr9:97623800-97629600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:97624200-97629400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr9:97624200-97632800	Weak transcription	Thymus	Thymus
10	chr9:97624600-97627800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr9:97624600-97628200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:97624600-97628200	Weak transcription	HepG2	liver
13	chr9:97624600-97629200	Weak transcription	HMEC	breast
14	chr9:97624600-97629400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:97624600-97629600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr9:97624600-97629600	Weak transcription	Esophagus	oesophagus
17	chr9:97624600-97629800	Weak transcription	Colonic Mucosa	Colon
18	chr9:97624800-97628000	Weak transcription	Ovary	ovary
19	chr9:97624800-97628200	Weak transcription	Left Ventricle	heart
20	chr9:97624800-97628200	Weak transcription	Psoas Muscle	Psoas
21	chr9:97624800-97632800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:97625000-97627800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:97625000-97627800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:97625000-97627800	Weak transcription	Stomach Mucosa	stomach
25	chr9:97625000-97628200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr9:97625000-97628600	Weak transcription	Liver	Liver
27	chr9:97625000-97628600	Weak transcription	Fetal Intestine Large	intestine
28	chr9:97625000-97628600	Weak transcription	Fetal Intestine Small	intestine
29	chr9:97625000-97629600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:97625000-97630400	Weak transcription	GM12878-XiMat	blood
31	chr9:97625000-97630600	Weak transcription	Pancreas	Pancrea
32	chr9:97625000-97632000	Weak transcription	Primary T cells from cord blood	blood
33	chr9:97625000-97637800	Weak transcription	Primary B cells from cord blood	blood
34	chr9:97625200-97628000	Weak transcription	Placenta	Placenta
35	chr9:97625200-97628200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:97625200-97630000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:97625200-97631800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr9:97625400-97631800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr9:97625400-97632200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr9:97625600-97632800	Weak transcription	Dnd41	blood
41	chr9:97625800-97629600	Enhancers	Hela-S3	cervix
42	chr9:97626000-97628000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:97626000-97628000	Enhancers	Brain Hippocampus Middle	brain
44	chr9:97626000-97628200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr9:97626000-97628800	Enhancers	Brain Substantia Nigra	brain
46	chr9:97626000-97629000	Enhancers	Fetal Stomach	stomach
47	chr9:97626000-97630600	Weak transcription	Lung	lung
48	chr9:97626000-97638200	Enhancers	HSMM	muscle
49	chr9:97626000-97638400	Enhancers	HSMMtube	muscle
50	chr9:97626200-97627800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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