Variant report

Variant	rs10821392
Chromosome Location	chr9:97508907-97508908
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10081676	0.81[EUR][1000 genomes]
rs10217143	0.82[EUR][1000 genomes]
rs10739982	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10739983	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761351	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761361	0.82[CEU][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs10821390	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821393	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821398	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821404	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821410	0.80[EUR][1000 genomes]
rs10993344	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11788697	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12338859	0.91[YRI][hapmap]
rs1867102	0.89[CEU][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs2031698	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743969	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744375	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744386	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7022894	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7027708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7847277	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7848139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7862219	0.81[CEU][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97489600-97524800	Weak transcription	Esophagus	oesophagus
2	chr9:97489800-97511000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:97489800-97511400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:97489800-97511600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:97489800-97521600	Weak transcription	Fetal Thymus	thymus
6	chr9:97489800-97522000	Weak transcription	Thymus	Thymus
7	chr9:97489800-97522400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:97490000-97510600	Weak transcription	Primary T cells from cord blood	blood
9	chr9:97490000-97510800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:97490000-97510800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr9:97490000-97510800	Weak transcription	Fetal Brain Female	brain
12	chr9:97490000-97510800	Weak transcription	NHDF-Ad	bronchial
13	chr9:97490000-97511600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr9:97490000-97511600	Weak transcription	Osteobl	bone
15	chr9:97490000-97512200	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:97490000-97519400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:97490000-97521600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:97490200-97510800	Weak transcription	GM12878-XiMat	blood
19	chr9:97490200-97511000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:97490200-97511000	Weak transcription	NHEK	skin
21	chr9:97490200-97512200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr9:97490200-97519200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:97490400-97511400	Weak transcription	Hela-S3	cervix
24	chr9:97490400-97511600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr9:97490600-97510800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:97491000-97511000	Weak transcription	Dnd41	blood
27	chr9:97496400-97511000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr9:97496800-97511600	Weak transcription	Left Ventricle	heart
29	chr9:97497000-97510000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:97497000-97510800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr9:97497000-97511400	Weak transcription	Adipose Nuclei	Adipose
32	chr9:97497000-97511600	Weak transcription	Psoas Muscle	Psoas
33	chr9:97497000-97522000	Weak transcription	Placenta	Placenta
34	chr9:97497200-97522200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:97497600-97511400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr9:97499400-97511600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:97502800-97518800	Weak transcription	K562	blood
38	chr9:97503000-97509200	Weak transcription	Brain Anterior Caudate	brain
39	chr9:97503000-97511000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr9:97503000-97511400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:97503000-97511400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr9:97503200-97522400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr9:97503400-97509000	Weak transcription	Fetal Intestine Large	intestine
44	chr9:97503800-97518800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr9:97504400-97511000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr9:97504400-97511000	Weak transcription	HSMM	muscle
47	chr9:97504400-97522600	Weak transcription	Ovary	ovary
48	chr9:97504600-97511200	Weak transcription	Fetal Kidney	kidney
49	chr9:97504600-97521800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr9:97505200-97522200	Weak transcription	NHLF	lung

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