Variant report

Variant	rs7901710
Chromosome Location	chr10:93575815-93575816
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10881973	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881974	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10881978	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10881979	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11186696	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186719	0.82[EUR][1000 genomes]
rs1539042	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1770466	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1770476	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1772179	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1772182	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1772183	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1772189	0.82[EUR][1000 genomes]
rs2153655	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2259305	0.81[EUR][1000 genomes]
rs2994393	0.82[EUR][1000 genomes]
rs3802650	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4612711	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7076687	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7079479	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7917858	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs7901710	TNKS2-AS1	cis	Artery Tibial	GTEx
rs7901710	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs7901710	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs7901710	HSBP1	trans	lymphoblastoid	RTeQTL
rs7901710	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs7901710	TNKS2-AS1	cis	Muscle Skeletal	GTEx
rs7901710	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs7901710	TNKS2-AS1	cis	Thyroid	GTEx
rs7901710	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs7901710	TNKS2-AS1	cis	lung	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
5	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:93563400-93580800	Weak transcription	Fetal Stomach	stomach
8	chr10:93563600-93578200	Weak transcription	Aorta	Aorta
9	chr10:93563800-93579400	Weak transcription	Right Atrium	heart
10	chr10:93564000-93579000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:93564600-93576600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:93565800-93577800	Weak transcription	Right Ventricle	heart
13	chr10:93565800-93578200	Weak transcription	Gastric	stomach
14	chr10:93565800-93578400	Weak transcription	Brain Angular Gyrus	brain
15	chr10:93565800-93579800	Weak transcription	Small Intestine	intestine
16	chr10:93567200-93624200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:93567600-93579800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:93569200-93626800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:93570000-93608000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:93570800-93625000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:93570800-93626000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:93570800-93626000	Strong transcription	Dnd41	blood
23	chr10:93571000-93580800	Weak transcription	Fetal Intestine Small	intestine
24	chr10:93571000-93623200	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:93571000-93624000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:93571000-93625800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:93571200-93578400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr10:93571200-93580000	Weak transcription	Pancreas	Pancrea
29	chr10:93571200-93626400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr10:93571400-93592800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:93571400-93626400	Strong transcription	Liver	Liver
32	chr10:93571400-93626400	Strong transcription	Fetal Thymus	thymus
33	chr10:93571600-93581400	Weak transcription	Spleen	Spleen
34	chr10:93572000-93579200	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:93572000-93589600	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:93572000-93626200	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr10:93572000-93626400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr10:93572000-93626400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:93572200-93591000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:93572200-93623600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:93572200-93625600	Strong transcription	Placenta	Placenta
42	chr10:93572200-93626400	Strong transcription	Primary B cells from cord blood	blood
43	chr10:93572400-93581600	Strong transcription	Hela-S3	cervix
44	chr10:93572400-93582400	Strong transcription	Primary hematopoietic stem cells	blood
45	chr10:93572400-93584200	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr10:93572400-93584400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:93572400-93595200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:93572400-93623000	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr10:93572400-93624400	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr10:93572400-93624800	Strong transcription	Primary T cells fromperipheralblood	blood

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