Variant report

Variant	rs2153655
Chromosome Location	chr10:93563056-93563057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93562465..93565733-chr10:93667895..93671227,3	MCF-7	breast:
2	chr10:93562756..93565303-chr10:93567938..93571115,3	K562	blood:
3	chr10:93559992..93564256-chr10:93566335..93570141,4	K562	blood:
4	chr10:93561483..93563173-chr10:93576310..93578426,2	K562	blood:
5	chr10:93558185..93560569-chr10:93560780..93564031,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180581	Chromatin interaction
ENSG00000174721	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10881973	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881974	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881978	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881979	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881987	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10881988	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11186696	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186719	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11186721	0.85[EUR][1000 genomes]
rs11186722	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11186723	0.80[ASN][1000 genomes]
rs12253245	0.80[ASN][1000 genomes]
rs1539042	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1770466	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1770476	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1772179	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1772182	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1772183	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1772189	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1890896	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2259305	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2994393	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3802650	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4611111	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4612711	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933698	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7069232	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7076687	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7079479	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7096581	0.82[AMR][1000 genomes]
rs7901710	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7917858	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs2153655	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs2153655	TNKS2-AS1	cis	Thyroid	GTEx
rs2153655	TNKS2-AS1	cis	Artery Tibial	GTEx
rs2153655	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs2153655	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs2153655	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs2153655	TNKS2-AS1	cis	lung	GTEx
rs2153655	TNKS2-AS1	cis	Muscle Skeletal	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93558800-93563200	Weak transcription	Spleen	Spleen
2	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:93559400-93572800	Weak transcription	Lung	lung
4	chr10:93559400-93573200	Weak transcription	Esophagus	oesophagus
5	chr10:93559600-93572400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:93560200-93563400	Weak transcription	Aorta	Aorta
9	chr10:93560200-93563400	Weak transcription	Brain Substantia Nigra	brain
10	chr10:93560200-93565000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:93560200-93565000	Weak transcription	Right Ventricle	heart
12	chr10:93560200-93567200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:93560200-93572800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:93560200-93572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
16	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:93560400-93563400	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:93560400-93564400	Weak transcription	GM12878-XiMat	blood
19	chr10:93560400-93564800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:93560400-93565000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:93560400-93565800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:93560400-93572600	Weak transcription	NH-A	brain
23	chr10:93560400-93572800	Weak transcription	A549	lung
24	chr10:93560400-93573200	Weak transcription	HSMMtube	muscle
25	chr10:93560400-93574400	Weak transcription	NHLF	lung
26	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr10:93560600-93563600	Weak transcription	Stomach Mucosa	stomach
28	chr10:93560600-93564000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr10:93560600-93564400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:93560600-93565200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:93560600-93568400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:93560800-93563200	Weak transcription	Brain Anterior Caudate	brain
33	chr10:93560800-93563200	Weak transcription	Fetal Brain Female	brain
34	chr10:93560800-93564800	Weak transcription	Adipose Nuclei	Adipose
35	chr10:93560800-93565000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:93560800-93565000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr10:93560800-93565000	Enhancers	HepG2	liver
38	chr10:93560800-93565000	Weak transcription	HUVEC	blood vessel
39	chr10:93560800-93565000	Weak transcription	Osteobl	bone
40	chr10:93560800-93565200	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:93560800-93565600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:93560800-93573400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr10:93561000-93563400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr10:93561000-93564800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:93561000-93565000	Weak transcription	Brain Angular Gyrus	brain
46	chr10:93561000-93565000	Weak transcription	HMEC	breast
47	chr10:93561000-93565400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr10:93561000-93572400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:93561000-93572800	Weak transcription	Fetal Kidney	kidney
50	chr10:93561200-93563400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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