Variant report

Variant	rs10881974
Chromosome Location	chr10:93574359-93574360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93567409..93570615-chr10:93572216..93575127,3	MCF-7	breast:
2	chr10:93557959..93559556-chr10:93572514..93574397,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228701	Chromatin interaction
ENSG00000107854	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10881973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881978	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881979	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881987	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10881988	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11186696	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186719	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11186721	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11186722	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11186723	0.82[ASN][1000 genomes]
rs12253245	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1539042	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1770466	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1770476	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1772179	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1772182	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1772183	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1772189	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1890896	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2153655	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2259305	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2994393	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3802650	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611111	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4612711	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4933698	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7069232	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7076687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7079479	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7096581	0.86[AMR][1000 genomes]
rs7901710	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7917858	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs10881974	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs10881974	TNKS2-AS1	cis	Thyroid	GTEx
rs10881974	TNKS2-AS1	cis	Muscle Skeletal	GTEx
rs10881974	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs10881974	TNKS2-AS1	cis	lung	GTEx
rs10881974	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs10881974	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs10881974	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs10881974	TNKS2-AS1	cis	Artery Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
5	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:93560400-93574400	Weak transcription	NHLF	lung
7	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:93563400-93580800	Weak transcription	Fetal Stomach	stomach
9	chr10:93563600-93578200	Weak transcription	Aorta	Aorta
10	chr10:93563800-93579400	Weak transcription	Right Atrium	heart
11	chr10:93564000-93579000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:93564600-93576600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:93565800-93574400	Weak transcription	Brain Substantia Nigra	brain
14	chr10:93565800-93577800	Weak transcription	Right Ventricle	heart
15	chr10:93565800-93578200	Weak transcription	Gastric	stomach
16	chr10:93565800-93578400	Weak transcription	Brain Angular Gyrus	brain
17	chr10:93565800-93579800	Weak transcription	Small Intestine	intestine
18	chr10:93567200-93624200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:93567600-93579800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:93569200-93626800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:93570000-93608000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:93570800-93625000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:93570800-93626000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:93570800-93626000	Strong transcription	Dnd41	blood
25	chr10:93571000-93580800	Weak transcription	Fetal Intestine Small	intestine
26	chr10:93571000-93623200	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr10:93571000-93624000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:93571000-93625800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr10:93571200-93574400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:93571200-93575200	Strong transcription	HSMM	muscle
31	chr10:93571200-93578400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:93571200-93580000	Weak transcription	Pancreas	Pancrea
33	chr10:93571200-93626400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr10:93571400-93592800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:93571400-93626400	Strong transcription	Liver	Liver
36	chr10:93571400-93626400	Strong transcription	Fetal Thymus	thymus
37	chr10:93571600-93575600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:93571600-93581400	Weak transcription	Spleen	Spleen
39	chr10:93572000-93579200	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:93572000-93589600	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:93572000-93626200	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr10:93572000-93626400	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr10:93572000-93626400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:93572200-93575000	Strong transcription	Stomach Smooth Muscle	stomach
45	chr10:93572200-93591000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:93572200-93623600	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:93572200-93625600	Strong transcription	Placenta	Placenta
48	chr10:93572200-93626400	Strong transcription	Primary B cells from cord blood	blood
49	chr10:93572400-93574800	Strong transcription	K562	blood
50	chr10:93572400-93575000	Strong transcription	NHEK	skin

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