Variant report

Variant	rs4612711
Chromosome Location	chr10:93570826-93570827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93562756..93565303-chr10:93567938..93571115,3	K562	blood:
2	chr10:93543025..93545865-chr10:93568099..93570933,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10881973	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881974	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881978	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881979	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881987	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10881988	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11186696	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186719	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11186721	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11186722	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11186723	0.81[ASN][1000 genomes]
rs12253245	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1539042	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1770466	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1770476	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1772179	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1772182	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1772183	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1772189	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1890896	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2153655	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2259305	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2994393	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3802650	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4611111	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4933698	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7069232	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7076687	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7079479	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7096581	0.84[AMR][1000 genomes]
rs7901710	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7917858	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs4612711	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs4612711	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs4612711	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs4612711	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs4612711	TNKS2-AS1	cis	lung	GTEx
rs4612711	TNKS2-AS1	cis	Muscle Skeletal	GTEx
rs4612711	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs4612711	TNKS2-AS1	cis	Artery Tibial	GTEx
rs4612711	TNKS2-AS1	cis	Thyroid	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93559400-93572800	Weak transcription	Lung	lung
3	chr10:93559400-93573200	Weak transcription	Esophagus	oesophagus
4	chr10:93559600-93572400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:93560200-93572800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:93560200-93572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
10	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:93560400-93572600	Weak transcription	NH-A	brain
12	chr10:93560400-93572800	Weak transcription	A549	lung
13	chr10:93560400-93573200	Weak transcription	HSMMtube	muscle
14	chr10:93560400-93574400	Weak transcription	NHLF	lung
15	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:93560800-93573400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:93561000-93572400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:93561000-93572800	Weak transcription	Fetal Kidney	kidney
19	chr10:93561600-93572800	Weak transcription	Fetal Brain Male	brain
20	chr10:93562600-93572800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:93563000-93572400	Weak transcription	Hela-S3	cervix
22	chr10:93563400-93572200	Weak transcription	Placenta	Placenta
23	chr10:93563400-93580800	Weak transcription	Fetal Stomach	stomach
24	chr10:93563600-93572800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:93563600-93578200	Weak transcription	Aorta	Aorta
26	chr10:93563800-93579400	Weak transcription	Right Atrium	heart
27	chr10:93564000-93573200	Weak transcription	Brain Germinal Matrix	brain
28	chr10:93564000-93579000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:93564400-93572200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:93564600-93572400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:93564600-93576600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:93564800-93572800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:93565200-93572000	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr10:93565200-93572400	Weak transcription	Primary T cells from cord blood	blood
35	chr10:93565400-93571000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:93565400-93571000	Weak transcription	HepG2	liver
37	chr10:93565400-93572600	Weak transcription	NHDF-Ad	bronchial
38	chr10:93565400-93574200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:93565600-93571800	Weak transcription	Fetal Heart	heart
40	chr10:93565600-93571800	Weak transcription	Stomach Mucosa	stomach
41	chr10:93565600-93572400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:93565600-93572400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:93565600-93572400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:93565600-93572600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:93565600-93572600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:93565600-93572800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:93565800-93571000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr10:93565800-93571200	Weak transcription	HSMM	muscle
49	chr10:93565800-93571400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:93565800-93571400	Weak transcription	Liver	Liver

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