Variant report

Variant	rs7909107
Chromosome Location	chr10:23435030-23435031
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10741016	0.96[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10764390	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828413	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886940	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2031572	0.92[ASN][1000 genomes]
rs2147943	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2147944	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2296468	0.85[AMR][1000 genomes]
rs4264069	0.90[ASN][1000 genomes]
rs4506535	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6482254	0.84[CHB][hapmap]
rs7893600	0.98[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7911227	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3427167	chr10:23433696-23435794	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23433000-23437200	Weak transcription	Pancreas	Pancrea
2	chr10:23434800-23435400	Bivalent/Poised TSS	HepG2	liver
3	chr10:23434800-23435400	Bivalent Enhancer	K562	blood
4	chr10:23435000-23435200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:23435000-23435200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:23435000-23435400	Bivalent Enhancer	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links