Variant report

Variant	rs791594
Chromosome Location	chr10:6085995-6085996
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6084469..6086008-chr10:6242758..6245153,2	MCF-7	breast:
2	chr10:6079422..6081935-chr10:6085039..6087592,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL15RA-4	chr10:6085748-6086292	NONHSAT011203

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction
ENSG00000213994	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10737035	1.00[AMR][1000 genomes]
rs1359134	1.00[AMR][1000 genomes]
rs1408014	1.00[AMR][1000 genomes]
rs2246034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2478142	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405212	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4607966	1.00[AMR][1000 genomes]
rs4749891	1.00[AMR][1000 genomes]
rs7078547	1.00[AMR][1000 genomes]
rs73616444	1.00[AMR][1000 genomes]
rs73618322	1.00[AMR][1000 genomes]
rs73618331	1.00[AMR][1000 genomes]
rs7896802	1.00[AMR][1000 genomes]
rs7911218	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7917819	1.00[AMR][1000 genomes]
rs7922099	1.00[AMR][1000 genomes]
rs8177588	1.00[AMR][1000 genomes]
rs8177595	1.00[AMR][1000 genomes]
rs8177615	1.00[AMR][1000 genomes]
rs8177626	1.00[CHD][hapmap]
rs8177629	1.00[AMR][1000 genomes]
rs8177632	1.00[AMR][1000 genomes]
rs8177687	1.00[AMR][1000 genomes]
rs8177718	1.00[AMR][1000 genomes]
rs8177739	1.00[AMR][1000 genomes]
rs9804284	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv894814	chr10:6078032-6100725	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6080200-6086400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:6080600-6086000	Weak transcription	Fetal Thymus	thymus
3	chr10:6080600-6086000	Weak transcription	Thymus	Thymus
4	chr10:6080600-6086800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:6082000-6086000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:6082000-6086000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:6082200-6086000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr10:6082200-6086000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
9	chr10:6083600-6086000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:6084800-6086200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:6085200-6086400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:6085400-6086800	Enhancers	Primary T cells from cord blood	blood
13	chr10:6085400-6086800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr10:6085400-6086800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:6085400-6087200	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:6085600-6087200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:6085600-6092000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:6085800-6086800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:6085800-6088200	Enhancers	Primary B cells from cord blood	blood
20	chr10:6085800-6088200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
21	chr10:6085800-6092400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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