Variant report

Variant	rs7917819
Chromosome Location	chr10:6045004-6045005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6039303..6041978-chr10:6044991..6047863,2	K562	blood:
2	chr10:6039303..6043147-chr10:6043755..6047051,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10737035	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1359134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1408014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2246034	1.00[AMR][1000 genomes]
rs2478142	1.00[AMR][1000 genomes]
rs4405212	1.00[AMR][1000 genomes]
rs4607966	1.00[AMR][1000 genomes]
rs4749891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7078547	1.00[AMR][1000 genomes]
rs73616444	1.00[AMR][1000 genomes]
rs73618322	1.00[AMR][1000 genomes]
rs73618331	1.00[AMR][1000 genomes]
rs7896802	1.00[AMR][1000 genomes]
rs7911218	1.00[AMR][1000 genomes]
rs791594	1.00[AMR][1000 genomes]
rs7922099	1.00[AMR][1000 genomes]
rs8177588	1.00[AMR][1000 genomes]
rs8177595	1.00[AMR][1000 genomes]
rs8177615	1.00[AMR][1000 genomes]
rs8177629	1.00[AMR][1000 genomes]
rs8177632	1.00[AMR][1000 genomes]
rs8177687	1.00[AMR][1000 genomes]
rs8177718	1.00[AMR][1000 genomes]
rs8177739	1.00[AMR][1000 genomes]
rs9804284	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6041600-6047800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:6042400-6047000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:6044000-6053000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:6044000-6055800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:6045000-6045200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:6045000-6046000	Enhancers	GM12878-XiMat	blood

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