Variant report

Variant	rs8177615
Chromosome Location	chr10:6023461-6023462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr10:6023359-6024011	K562	blood:	n/a	n/a
2	ZNF384	chr10:6023457-6024183	K562	blood:	n/a	n/a
3	CEBPD	chr10:6023295-6024020	K562	blood:	n/a	n/a
4	GATA1	chr10:6022840-6024153	K562	blood:	n/a	n/a
5	YY1	chr10:6023417-6023690	K562	blood:	n/a	n/a
6	CEBPD	chr10:6023419-6023918	K562	blood:	n/a	n/a
7	ZNF274	chr10:6023414-6023963	K562	blood:	n/a	n/a
8	GATA1	chr10:6023223-6023985	PBDE	blood:	n/a	n/a
9	RCOR1	chr10:6023179-6023954	K562	blood:	n/a	n/a
10	STAT5A	chr10:6023379-6023988	K562	blood:	n/a	n/a
11	TEAD4	chr10:6023376-6023971	K562	blood:	n/a	n/a
12	MAX	chr10:6023331-6024077	K562	blood:	n/a	chr10:6023936-6023947
13	TAL1	chr10:6023342-6023974	K562	blood:	n/a	chr10:6023764-6023773 chr10:6023761-6023776 chr10:6023769-6023784 chr10:6023769-6023784 chr10:6023729-6023747 chr10:6023769-6023784
14	TEAD4	chr10:6023312-6024012	K562	blood:	n/a	n/a
15	MYC	chr10:6023330-6023976	K562	blood:	n/a	chr10:6023936-6023947
16	MAX	chr10:6023458-6023703	K562	blood:	n/a	n/a
17	GATA2	chr10:6023389-6023985	K562	blood:	n/a	n/a
18	JUND	chr10:6023434-6023883	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:6018280..6021234-chr10:6022960..6024557,2	MCF-7	breast:
2	chr10:6023454..6025587-chr10:6029284..6031828,3	K562	blood:
3	chr10:6018052..6020391-chr10:6022296..6024852,3	MCF-7	breast:
4	chr10:6012910..6014707-chr10:6021829..6023507,2	MCF-7	breast:

Variant related genes	Relation type
IL15RA	TF binding region
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10737035	1.00[AMR][1000 genomes]
rs1359134	1.00[AMR][1000 genomes]
rs1408014	1.00[AMR][1000 genomes]
rs2246034	1.00[AMR][1000 genomes]
rs2478142	1.00[AMR][1000 genomes]
rs4405212	1.00[AMR][1000 genomes]
rs4607966	1.00[AMR][1000 genomes]
rs4749891	1.00[AMR][1000 genomes]
rs7078547	1.00[AMR][1000 genomes]
rs73616444	1.00[AMR][1000 genomes]
rs73618322	1.00[AMR][1000 genomes]
rs73618331	1.00[AMR][1000 genomes]
rs7896802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7911218	1.00[AMR][1000 genomes]
rs791594	1.00[AMR][1000 genomes]
rs7917819	1.00[AMR][1000 genomes]
rs7922099	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8177588	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8177594	0.85[AFR][1000 genomes]
rs8177595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8177598	0.85[AFR][1000 genomes]
rs8177629	1.00[AMR][1000 genomes]
rs8177632	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8177680	0.83[YRI][hapmap]
rs8177687	1.00[AMR][1000 genomes]
rs8177718	1.00[AMR][1000 genomes]
rs8177739	1.00[AMR][1000 genomes]
rs9804284	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv894810	chr10:6015595-6023466	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6020400-6025800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:6020400-6029800	Weak transcription	Ovary	ovary
3	chr10:6020800-6025600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:6021000-6027800	Weak transcription	Adipose Nuclei	Adipose
5	chr10:6022200-6023800	Enhancers	Pancreas	Pancrea
6	chr10:6023200-6023800	Active TSS	Spleen	Spleen
7	chr10:6023200-6024000	Flanking Active TSS	K562	blood
8	chr10:6023400-6023800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

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