Variant report

Variant	rs7916438
Chromosome Location	chr10:97076792-97076793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97071047..97076253-chr10:97076532..97079541,6	K562	blood:
2	chr10:97071603..97074212-chr10:97074276..97076848,4	K562	blood:
3	chr10:97073155..97074833-chr10:97074893..97076970,2	MCF-7	breast:
4	chr10:97067527..97069717-chr10:97074996..97076961,2	MCF-7	breast:
5	chr10:97049887..97051663-chr10:97075452..97078110,2	K562	blood:
6	chr10:97048574..97053908-chr10:97072815..97077424,5	K562	blood:
7	chr10:97074843..97077067-chr10:97087421..97090006,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11188283	0.86[ASN][1000 genomes]
rs1410604	0.84[ASN][1000 genomes]
rs1410605	0.84[ASN][1000 genomes]
rs17849148	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35357073	0.84[ASN][1000 genomes]
rs4917685	0.83[ASN][1000 genomes]
rs4918914	0.83[ASN][1000 genomes]
rs726175	0.87[ASN][1000 genomes]
rs7919009	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97064600-97078200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97069200-97087000	Weak transcription	HSMM	muscle
3	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
4	chr10:97070800-97085800	Weak transcription	Small Intestine	intestine
5	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:97071000-97086000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:97071000-97087000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:97071000-97087000	Weak transcription	Esophagus	oesophagus
9	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
10	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
11	chr10:97072000-97087000	Strong transcription	Adipose Nuclei	Adipose
12	chr10:97072400-97078400	Weak transcription	Fetal Lung	lung
13	chr10:97072600-97077200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:97072600-97077200	Genic enhancers	Rectal Smooth Muscle	rectum
15	chr10:97072800-97078200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:97073000-97076800	Genic enhancers	Left Ventricle	heart
17	chr10:97073000-97077600	Strong transcription	Fetal Stomach	stomach
18	chr10:97073000-97085000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:97073000-97085600	Weak transcription	Stomach Mucosa	stomach
20	chr10:97073200-97080400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:97073400-97081000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:97073400-97084200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:97073400-97092600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr10:97073400-97092800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:97073600-97080800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:97074000-97080600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:97074000-97080600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:97074200-97078600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:97074200-97078600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:97074400-97079000	Weak transcription	HSMMtube	muscle
32	chr10:97074400-97079600	Weak transcription	Lung	lung
33	chr10:97074400-97080400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:97074400-97080800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:97074400-97087400	Weak transcription	Spleen	Spleen
36	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:97074600-97076800	Weak transcription	Placenta	Placenta
38	chr10:97074600-97079400	Weak transcription	Right Ventricle	heart
39	chr10:97074600-97084800	Weak transcription	Right Atrium	heart
40	chr10:97074600-97087000	Strong transcription	Aorta	Aorta
41	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:97074800-97079600	Weak transcription	Fetal Intestine Small	intestine
43	chr10:97074800-97080600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:97074800-97087000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:97075000-97079200	Weak transcription	Fetal Intestine Large	intestine
46	chr10:97075000-97080400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr10:97075200-97079000	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:97075200-97080600	Weak transcription	HepG2	liver
49	chr10:97075200-97087000	Weak transcription	Psoas Muscle	Psoas
50	chr10:97075200-97098800	Weak transcription	Ovary	ovary

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