Variant report

Variant	rs7919009
Chromosome Location	chr10:97119930-97119931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:97119923-97120123	K562	blood:	n/a	n/a
2	TEAD4	chr10:97119868-97120243	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97110313..97112983-chr10:97116773..97120494,3	K562	blood:

Variant related genes	Relation type
SORBS1	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10509694	0.84[JPT][hapmap]
rs11188283	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11188284	0.84[JPT][hapmap]
rs11188287	0.83[YRI][hapmap]
rs11188312	0.82[CEU][hapmap]
rs1410604	0.91[ASN][1000 genomes]
rs1410605	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1556054	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs17849148	0.82[ASN][1000 genomes]
rs35357073	0.91[ASN][1000 genomes]
rs41528346	0.84[JPT][hapmap]
rs4917685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4918914	0.92[ASN][1000 genomes]
rs726175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7916438	0.84[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
4	chr10:97107200-97120200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:97109200-97120000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:97111000-97127400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:97114800-97120800	Genic enhancers	Stomach Smooth Muscle	stomach
11	chr10:97115400-97120000	Weak transcription	HUVEC	blood vessel
12	chr10:97115800-97120000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:97115800-97131600	Weak transcription	HSMMtube	muscle
14	chr10:97116000-97135000	Weak transcription	Brain Substantia Nigra	brain
15	chr10:97116000-97138200	Weak transcription	Ovary	ovary
16	chr10:97116400-97120200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:97116400-97121600	Weak transcription	Right Atrium	heart
18	chr10:97116400-97121800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:97116400-97123000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:97116400-97130600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:97116600-97120000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:97116600-97120200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:97116600-97120200	Weak transcription	Esophagus	oesophagus
26	chr10:97116600-97120600	Strong transcription	Adipose Nuclei	Adipose
27	chr10:97116600-97120800	Weak transcription	Spleen	Spleen
28	chr10:97116600-97127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:97116600-97130800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr10:97116800-97120200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:97116800-97121600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:97116800-97122800	Weak transcription	Fetal Intestine Large	intestine
34	chr10:97116800-97123000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr10:97116800-97130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:97116800-97135200	Weak transcription	Brain Angular Gyrus	brain
37	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
39	chr10:97117000-97120000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:97117000-97122800	Weak transcription	Fetal Heart	heart
41	chr10:97117000-97123000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr10:97117000-97130800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr10:97117200-97122400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr10:97117200-97128000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:97117400-97120000	Weak transcription	Gastric	stomach
46	chr10:97117400-97120400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:97117400-97120600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:97117400-97121600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:97117400-97121600	Weak transcription	Brain Anterior Caudate	brain
50	chr10:97117400-97121600	Weak transcription	Psoas Muscle	Psoas

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