Variant report

Variant	rs1410605
Chromosome Location	chr10:97103523-97103524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10509694	0.89[JPT][hapmap]
rs11188273	0.84[JPT][hapmap]
rs11188277	0.84[JPT][hapmap]
rs11188283	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188284	0.89[JPT][hapmap]
rs1410599	1.00[CEU][hapmap];0.84[JPT][hapmap];0.80[MEX][hapmap]
rs1410602	0.83[LWK][hapmap]
rs1410604	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556054	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.88[LWK][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17849148	0.86[ASN][1000 genomes]
rs2274629	0.83[LWK][hapmap]
rs35357073	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41528346	0.89[JPT][hapmap]
rs4917685	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.80[TSI][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4918914	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7083399	0.80[LWK][hapmap]
rs7085208	0.86[AFR][1000 genomes]
rs726175	0.81[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs726176	0.83[LWK][hapmap]
rs7916438	0.84[ASN][1000 genomes]
rs7919009	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs955760	0.85[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1410605	FGFBP3	cis	parietal	SCAN

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
4	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
6	chr10:97088000-97110600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:97093200-97103600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:97093200-97106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:97093400-97103600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:97093400-97103600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:97094400-97106600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:97094600-97118000	Weak transcription	HSMM	muscle
13	chr10:97095000-97110600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:97095000-97115200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:97096400-97108400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:97096400-97110600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:97096600-97110600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:97096800-97110600	Weak transcription	Psoas Muscle	Psoas
19	chr10:97097000-97106200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:97097800-97110600	Weak transcription	Right Atrium	heart
21	chr10:97097800-97116000	Weak transcription	Spleen	Spleen
22	chr10:97099200-97103600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:97099200-97105000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:97099200-97106600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:97099200-97106600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:97099200-97106600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:97099200-97106800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:97099200-97108400	Weak transcription	Gastric	stomach
29	chr10:97099200-97110600	Weak transcription	Lung	lung
30	chr10:97099200-97110800	Weak transcription	Fetal Intestine Small	intestine
31	chr10:97099200-97113400	Weak transcription	Ovary	ovary
32	chr10:97099200-97115200	Weak transcription	Esophagus	oesophagus
33	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:97099400-97103600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:97099400-97103600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:97099400-97104400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:97099400-97106600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:97099400-97106600	Weak transcription	Pancreas	Pancrea
39	chr10:97099400-97110000	Weak transcription	HMEC	breast
40	chr10:97099400-97110200	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:97099400-97111000	Weak transcription	Brain Substantia Nigra	brain
42	chr10:97099600-97105800	Weak transcription	GM12878-XiMat	blood
43	chr10:97100000-97106600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:97100600-97105200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:97100800-97108600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:97101000-97104800	Enhancers	HepG2	liver
47	chr10:97101200-97105200	Weak transcription	Brain Germinal Matrix	brain
48	chr10:97101200-97106600	Weak transcription	Right Ventricle	heart
49	chr10:97101200-97108400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr10:97101400-97105000	Weak transcription	Aorta	Aorta

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