Variant report

Variant	rs4917685
Chromosome Location	chr10:97115172-97115173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97048384..97051804-chr10:97112721..97115504,3	MCF-7	breast:
2	chr10:97051927..97054727-chr10:97113861..97115578,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10509694	0.84[JPT][hapmap]
rs11188283	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11188284	0.84[JPT][hapmap]
rs1410602	0.83[LWK][hapmap]
rs1410604	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1410605	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.80[TSI][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1556054	1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];0.88[LWK][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17849148	0.86[ASN][1000 genomes]
rs2274629	0.83[LWK][hapmap]
rs35357073	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs41528346	0.84[JPT][hapmap]
rs4918914	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7083399	0.80[LWK][hapmap]
rs7085208	0.85[AFR][1000 genomes]
rs726175	0.91[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs726176	0.83[LWK][hapmap]
rs7916438	0.83[ASN][1000 genomes]
rs7919009	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs955760	0.85[CHD][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4917685	PDLIM1	cis	cerebellum	SCAN
rs4917685	FGFBP3	cis	parietal	SCAN

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
3	chr10:97094600-97118000	Weak transcription	HSMM	muscle
4	chr10:97095000-97115200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:97097800-97116000	Weak transcription	Spleen	Spleen
6	chr10:97099200-97115200	Weak transcription	Esophagus	oesophagus
7	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
9	chr10:97103400-97118000	Strong transcription	Fetal Brain Female	brain
10	chr10:97105000-97118200	Strong transcription	Aorta	Aorta
11	chr10:97107000-97115600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:97107200-97120200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:97107600-97116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:97107600-97116600	Genic enhancers	Adipose Nuclei	Adipose
16	chr10:97107600-97119800	Strong transcription	Fetal Stomach	stomach
17	chr10:97107800-97115200	Strong transcription	Left Ventricle	heart
18	chr10:97107800-97115400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:97107800-97119400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:97108600-97115800	Strong transcription	HSMMtube	muscle
21	chr10:97108600-97119200	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:97109200-97120000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:97110000-97117400	Strong transcription	Brain Germinal Matrix	brain
26	chr10:97110400-97116800	Strong transcription	Brain Cingulate Gyrus	brain
27	chr10:97110400-97116800	Strong transcription	Fetal Intestine Large	intestine
28	chr10:97110400-97116800	Strong transcription	Fetal Muscle Leg	muscle
29	chr10:97110600-97116800	Strong transcription	Brain Angular Gyrus	brain
30	chr10:97110600-97117200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:97110800-97115200	Strong transcription	Right Ventricle	heart
32	chr10:97111000-97115200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:97111000-97116400	Weak transcription	Fetal Heart	heart
34	chr10:97111000-97117400	Strong transcription	Brain Anterior Caudate	brain
35	chr10:97111000-97127400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:97111400-97115600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:97111600-97115200	Weak transcription	Lung	lung
38	chr10:97111600-97115200	Weak transcription	Pancreas	Pancrea
39	chr10:97111600-97115200	Weak transcription	Right Atrium	heart
40	chr10:97111600-97115600	Weak transcription	Fetal Lung	lung
41	chr10:97111600-97117600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:97111800-97115200	Strong transcription	Placenta	Placenta
43	chr10:97111800-97115600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:97111800-97117000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:97112000-97115200	Weak transcription	Gastric	stomach
46	chr10:97112200-97117200	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:97112600-97118800	Strong transcription	Brain Hippocampus Middle	brain
48	chr10:97113000-97117600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr10:97113200-97115200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:97113400-97116000	Strong transcription	Ovary	ovary

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