Variant report

Variant	rs10509694
Chromosome Location	chr10:97066807-97066808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97055600..97058139-chr10:97065773..97067717,2	K562	blood:
2	chr10:97046965..97049082-chr10:97066729..97068931,2	K562	blood:
3	chr10:97049641..97053849-chr10:97062543..97067097,4	K562	blood:
4	chr10:97065717..97068641-chr10:97084315..97087112,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11188273	0.81[CHD][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs11188274	0.81[AMR][1000 genomes]
rs11188277	0.94[JPT][hapmap]
rs11188283	0.84[JPT][hapmap]
rs11188284	0.88[JPT][hapmap]
rs11813902	0.81[AMR][1000 genomes]
rs1410599	0.88[CHD][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1410605	0.89[JPT][hapmap]
rs1556054	0.87[JPT][hapmap]
rs36112739	0.84[ASN][1000 genomes]
rs3814156	0.82[AMR][1000 genomes]
rs41528346	0.88[JPT][hapmap]
rs4917685	0.84[JPT][hapmap]
rs67035837	0.84[ASN][1000 genomes]
rs726175	0.89[JPT][hapmap]
rs7919009	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv552021	chr10:97053404-97071334	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97055600-97072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:97055800-97067600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:97057600-97070200	Weak transcription	Spleen	Spleen
4	chr10:97058000-97068200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:97058200-97067600	Weak transcription	GM12878-XiMat	blood
6	chr10:97063400-97067600	Enhancers	A549	lung
7	chr10:97063400-97072400	Weak transcription	Fetal Brain Female	brain
8	chr10:97063400-97073600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:97063600-97067000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:97063600-97067600	Weak transcription	Pancreas	Pancrea
11	chr10:97063600-97068400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:97063600-97068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:97063600-97070400	Weak transcription	Lung	lung
14	chr10:97064000-97067000	Weak transcription	NH-A	brain
15	chr10:97064000-97067600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:97064000-97067600	Weak transcription	Right Atrium	heart
17	chr10:97064000-97067600	Weak transcription	HMEC	breast
18	chr10:97064000-97068400	Enhancers	K562	blood
19	chr10:97064000-97073200	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:97064200-97068400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:97064600-97067600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:97064600-97068400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:97064600-97070400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:97064600-97078200	Weak transcription	Colonic Mucosa	Colon
25	chr10:97064800-97068800	Weak transcription	Gastric	stomach
26	chr10:97064800-97070000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:97064800-97070000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:97064800-97070200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:97064800-97070600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:97065000-97070200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:97065200-97067000	Weak transcription	Stomach Mucosa	stomach
32	chr10:97065200-97068400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr10:97065400-97068200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:97065400-97069400	Weak transcription	Small Intestine	intestine
35	chr10:97065800-97067200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:97065800-97067600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:97066000-97067600	Weak transcription	HepG2	liver
38	chr10:97066000-97073000	Weak transcription	Fetal Intestine Large	intestine
39	chr10:97066000-97073600	Weak transcription	Fetal Intestine Small	intestine
40	chr10:97066200-97067800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:97066400-97067200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr10:97066400-97067600	Weak transcription	Aorta	Aorta
43	chr10:97066400-97067600	Weak transcription	Fetal Heart	heart
44	chr10:97066400-97067600	Weak transcription	Left Ventricle	heart
45	chr10:97066400-97068000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:97066800-97067000	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr10:97066800-97068400	Enhancers	Hela-S3	cervix

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