Variant report

Variant	rs1556054
Chromosome Location	chr10:97124665-97124666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97004316..97007342-chr10:97122955..97125277,3	MCF-7	breast:
2	chr10:97048598..97050877-chr10:97124558..97126596,2	MCF-7	breast:
3	chr10:97044827..97046617-chr10:97124557..97126196,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10509694	0.87[JPT][hapmap]
rs11188273	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs11188277	0.81[JPT][hapmap]
rs11188283	1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];0.84[LWK][hapmap];0.82[YRI][hapmap];0.85[ASN][1000 genomes]
rs11188284	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs1410599	0.81[JPT][hapmap]
rs1410604	0.86[ASN][1000 genomes]
rs1410605	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.88[LWK][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17849148	0.90[EUR][1000 genomes]
rs35357073	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs41528346	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs4917685	1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];0.88[LWK][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4918914	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7085208	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs726175	1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];0.81[LWK][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs7919009	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs955760	0.82[CHD][hapmap]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
4	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:97111000-97127400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:97115800-97131600	Weak transcription	HSMMtube	muscle
9	chr10:97116000-97135000	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97116000-97138200	Weak transcription	Ovary	ovary
11	chr10:97116400-97130600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:97116600-97127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:97116600-97130800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:97116800-97130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:97116800-97135200	Weak transcription	Brain Angular Gyrus	brain
19	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
21	chr10:97117000-97130800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:97117200-97128000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:97117400-97139200	Weak transcription	Brain Germinal Matrix	brain
24	chr10:97117600-97125000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:97117600-97138000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:97118000-97135800	Weak transcription	Fetal Brain Female	brain
27	chr10:97118000-97137800	Weak transcription	Pancreas	Pancrea
28	chr10:97118200-97125000	Weak transcription	Placenta	Placenta
29	chr10:97120400-97124800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:97120400-97127800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:97120400-97141400	Weak transcription	Gastric	stomach
32	chr10:97120600-97130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr10:97121000-97129400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
35	chr10:97121200-97124800	Weak transcription	Fetal Stomach	stomach
36	chr10:97121400-97125800	Weak transcription	Lung	lung
37	chr10:97121800-97130400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr10:97122000-97124800	Weak transcription	Fetal Intestine Small	intestine
39	chr10:97122000-97135000	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
41	chr10:97122200-97128400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:97122200-97135000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:97122400-97125200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:97122400-97131600	Weak transcription	Psoas Muscle	Psoas
45	chr10:97122600-97124800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:97122600-97128600	Weak transcription	Right Atrium	heart
47	chr10:97123000-97124800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:97123000-97126200	Weak transcription	Right Ventricle	heart
49	chr10:97123200-97128400	Weak transcription	Fetal Heart	heart
50	chr10:97123200-97129200	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links