Variant report

Variant	rs7927830
Chromosome Location	chr11:76120315-76120316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10793159	0.82[AMR][1000 genomes]
rs10793160	0.85[AMR][1000 genomes]
rs12221507	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12223637	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs12223763	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12225661	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12420155	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1893870	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2017759	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2156708	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592632	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7113820	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs867247	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs867248	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs871911	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7927830	RP11-111M22.2	cis	Thyroid	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76097200-76122000	Weak transcription	Fetal Stomach	stomach
2	chr11:76118800-76120400	Enhancers	Fetal Kidney	kidney
3	chr11:76119200-76120800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:76120200-76121600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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