Variant report

Variant	rs871911
Chromosome Location	chr11:76123849-76123850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10793159	0.83[AMR][1000 genomes]
rs10793160	0.87[AMR][1000 genomes]
rs12221507	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12223637	0.95[CEU][hapmap];0.81[CHD][hapmap];0.87[MEX][hapmap]
rs12223763	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12225661	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12420155	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1893870	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2017759	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2156708	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945083	0.80[MEX][hapmap]
rs6592632	1.00[CEU][hapmap];0.81[CHD][hapmap];0.87[MEX][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7113820	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7927830	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867247	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs867248	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs871911	PDE2A	cis	cerebellum	SCAN
rs871911	RP11-111M22.2	cis	Thyroid	GTEx
rs871911	C2CD3	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76121800-76124600	Enhancers	Fetal Muscle Leg	muscle
2	chr11:76123800-76124000	Flanking Active TSS	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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