Variant report

Variant	rs7943915
Chromosome Location	chr11:57072201-57072202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RPC155	chr11:57072015-57072679	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:57070443..57073281-chr11:57104289..57106679,2	MCF-7	breast:
2	chr11:57070885..57073052-chr2:97171021..97172716,2	MCF-7	breast:
3	chr11:57065084..57068349-chr11:57071009..57074536,5	K562	blood:

Variant related genes	Relation type
TNKS1BP1	TF binding region
ENSG00000109991	Chromatin interaction
ENSG00000163121	Chromatin interaction
ENSG00000149115	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10732882	0.83[ASN][1000 genomes]
rs10792083	0.90[ASN][1000 genomes]
rs10792085	0.91[ASN][1000 genomes]
rs10896596	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10896599	0.83[EUR][1000 genomes]
rs10896601	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896602	0.91[ASN][1000 genomes]
rs10896609	0.82[ASN][1000 genomes]
rs11228971	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11228988	0.90[ASN][1000 genomes]
rs11602501	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604373	0.89[ASN][1000 genomes]
rs17573746	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1939496	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3935069	0.98[ASN][1000 genomes]
rs4939129	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4939131	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4939134	0.86[ASN][1000 genomes]
rs5012051	0.89[EUR][1000 genomes]
rs55637147	0.83[ASN][1000 genomes]
rs7130020	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7928905	0.89[ASN][1000 genomes]
rs7931298	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7936545	0.87[ASN][1000 genomes]
rs7943761	0.90[ASN][1000 genomes]
rs7948723	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57052400-57078200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:57067200-57078400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:57067400-57078400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr11:57067400-57079000	Weak transcription	Primary B cells from cord blood	blood
5	chr11:57067600-57072400	Strong transcription	Right Ventricle	heart
6	chr11:57067600-57078400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:57067800-57073200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:57067800-57078000	Weak transcription	Fetal Heart	heart
9	chr11:57067800-57078400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:57068400-57072600	Strong transcription	A549	lung
11	chr11:57068400-57073600	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:57068400-57078400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:57068400-57081600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:57068600-57073600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:57068800-57078200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr11:57068800-57078200	Weak transcription	Fetal Brain Male	brain
17	chr11:57069200-57076400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:57069600-57073000	Strong transcription	Fetal Intestine Small	intestine
19	chr11:57069600-57073800	Weak transcription	Fetal Kidney	kidney
20	chr11:57069600-57076800	Weak transcription	Brain Substantia Nigra	brain
21	chr11:57069600-57078400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:57069800-57072800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:57069800-57074000	Weak transcription	Small Intestine	intestine
24	chr11:57069800-57076400	Weak transcription	Fetal Thymus	thymus
25	chr11:57069800-57078200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:57069800-57078600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:57069800-57078600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr11:57070000-57074600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:57070000-57078200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:57070000-57078400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:57070000-57078600	Weak transcription	Primary T cells from cord blood	blood
32	chr11:57070200-57074800	Weak transcription	Brain Angular Gyrus	brain
33	chr11:57070200-57078200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:57070200-57078400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:57070200-57078600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:57070400-57073800	Strong transcription	Fetal Intestine Large	intestine
37	chr11:57070400-57076200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr11:57070600-57072600	Weak transcription	Left Ventricle	heart
39	chr11:57070600-57073200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:57070600-57073200	Genic enhancers	Pancreas	Pancrea
41	chr11:57070600-57078000	Genic enhancers	HMEC	breast
42	chr11:57070800-57073200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
43	chr11:57070800-57073800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:57070800-57073800	Genic enhancers	Fetal Muscle Trunk	muscle
45	chr11:57070800-57075000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr11:57070800-57075000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:57070800-57075200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:57070800-57075400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:57070800-57076000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:57070800-57077600	Weak transcription	Thymus	Thymus

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