Variant report

Variant	rs7961903
Chromosome Location	chr12:9869740-9869741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1008611	0.83[ASN][1000 genomes]
rs10743821	0.83[ASN][1000 genomes]
rs10743822	0.83[ASN][1000 genomes]
rs10772060	0.89[ASN][1000 genomes]
rs11052718	0.83[ASN][1000 genomes]
rs11052785	0.83[ASN][1000 genomes]
rs12369995	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12370579	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12371503	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12371981	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12371982	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12578698	0.83[ASN][1000 genomes]
rs12582616	0.83[ASN][1000 genomes]
rs12809752	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12812783	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12814560	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12816660	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12817550	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12817743	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12818179	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12819865	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12820674	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12823653	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12830448	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12830867	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12830878	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1861089	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1990533	0.83[ASN][1000 genomes]
rs2080207	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2192433	0.83[ASN][1000 genomes]
rs2192434	0.83[ASN][1000 genomes]
rs2192435	0.83[ASN][1000 genomes]
rs2192439	0.89[ASN][1000 genomes]
rs2401396	0.83[ASN][1000 genomes]
rs34201389	0.83[ASN][1000 genomes]
rs34623781	0.89[ASN][1000 genomes]
rs34826829	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35078787	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35512621	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4763280	1.00[ASN][1000 genomes]
rs4763814	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4763819	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4763835	0.83[ASN][1000 genomes]
rs61913428	0.83[ASN][1000 genomes]
rs66725265	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67429242	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71441764	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7485402	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7954062	0.89[ASN][1000 genomes]
rs7961812	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7974554	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7975557	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7975865	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs982511	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv983235	chr12:9852218-9893776	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2757490	chr12:9855958-9888553	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv442255	chr12:9862078-9874924	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3693109	chr12:9863968-9876091	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv8910	chr12:9865993-9872509	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv976571	chr12:9868953-9873977	Enhancers Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7961903	LOC374443	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9858000-9872200	Enhancers	Primary B cells from peripheral blood	blood
2	chr12:9859000-9870200	Enhancers	Primary B cells from cord blood	blood
3	chr12:9861000-9873200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr12:9861000-9874200	Weak transcription	Fetal Thymus	thymus
5	chr12:9861600-9882400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:9861800-9874000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:9864000-9873600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr12:9864600-9883800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr12:9868200-9869800	Genic enhancers	GM12878-XiMat	blood
10	chr12:9868400-9872600	Weak transcription	HUVEC	blood vessel
11	chr12:9868600-9879200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr12:9869200-9874200	Weak transcription	K562	blood

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