Variant report

Variant	rs7975037
Chromosome Location	chr12:56176196-56176197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:56174990..56177301-chr12:56178370..56180061,2	MCF-7	breast:
2	chr12:56165177..56167072-chr12:56175490..56177284,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1066130	1.00[EUR][1000 genomes]
rs1068188	1.00[EUR][1000 genomes]
rs1068189	1.00[EUR][1000 genomes]
rs1088050	1.00[EUR][1000 genomes]
rs11833164	1.00[EUR][1000 genomes]
rs11834873	1.00[EUR][1000 genomes]
rs13020	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1681071	1.00[EUR][1000 genomes]
rs1681079	1.00[EUR][1000 genomes]
rs1681080	1.00[EUR][1000 genomes]
rs1681088	1.00[EUR][1000 genomes]
rs1689508	1.00[EUR][1000 genomes]
rs1689509	1.00[EUR][1000 genomes]
rs1701701	1.00[EUR][1000 genomes]
rs1701702	1.00[EUR][1000 genomes]
rs17117863	1.00[CHB][hapmap]
rs17117976	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17844785	1.00[ASN][1000 genomes]
rs17844786	1.00[ASN][1000 genomes]
rs17844787	1.00[ASN][1000 genomes]
rs2231467	1.00[ASN][1000 genomes]
rs2625137	1.00[EUR][1000 genomes]
rs2625146	1.00[EUR][1000 genomes]
rs2640568	1.00[EUR][1000 genomes]
rs2658478	1.00[EUR][1000 genomes]
rs34323718	1.00[EUR][1000 genomes]
rs57785224	1.00[EUR][1000 genomes]
rs57990974	1.00[EUR][1000 genomes]
rs59794023	1.00[EUR][1000 genomes]
rs60297652	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6581081	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs705697	1.00[EUR][1000 genomes]
rs705710	1.00[EUR][1000 genomes]
rs705712	1.00[EUR][1000 genomes]
rs705713	1.00[EUR][1000 genomes]
rs705714	1.00[EUR][1000 genomes]
rs705716	1.00[EUR][1000 genomes]
rs715817	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7310292	1.00[EUR][1000 genomes]
rs73332259	1.00[EUR][1000 genomes]
rs772255	1.00[CHB][hapmap]
rs772258	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs772459	1.00[EUR][1000 genomes]
rs772463	1.00[EUR][1000 genomes]
rs772464	1.00[EUR][1000 genomes]
rs772470	1.00[EUR][1000 genomes]
rs772474	1.00[EUR][1000 genomes]
rs772697	1.00[EUR][1000 genomes]
rs772698	1.00[EUR][1000 genomes]
rs772699	1.00[EUR][1000 genomes]
rs772701	1.00[EUR][1000 genomes]
rs772705	1.00[EUR][1000 genomes]
rs7958958	1.00[EUR][1000 genomes]
rs7980782	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832423	chr12:56080822-56253698	Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56142000-56191800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:56144600-56208800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:56144800-56198600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr12:56145200-56199400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:56149400-56209600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:56152600-56179600	Weak transcription	Pancreas	Pancrea
7	chr12:56152800-56209000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:56153000-56176400	Weak transcription	Colon Smooth Muscle	Colon
9	chr12:56153000-56182400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:56154400-56178400	Weak transcription	Fetal Brain Male	brain
11	chr12:56154400-56180600	Weak transcription	Right Ventricle	heart
12	chr12:56160000-56179600	Weak transcription	Aorta	Aorta
13	chr12:56160000-56197600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:56160200-56180000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr12:56160200-56184600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:56160400-56209600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr12:56162200-56183200	Strong transcription	Primary T cells from cord blood	blood
18	chr12:56163000-56198600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr12:56163200-56199800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr12:56163200-56209400	Strong transcription	Fetal Thymus	thymus
21	chr12:56163400-56184600	Strong transcription	Placenta	Placenta
22	chr12:56163400-56198000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr12:56163800-56177200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr12:56164000-56197600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr12:56164200-56178200	Strong transcription	Fetal Stomach	stomach
26	chr12:56164800-56185000	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr12:56166000-56178000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr12:56166400-56176400	Weak transcription	Brain Angular Gyrus	brain
29	chr12:56166400-56176800	Weak transcription	Brain Substantia Nigra	brain
30	chr12:56166400-56177200	Weak transcription	NHEK	skin
31	chr12:56166400-56177800	Weak transcription	Psoas Muscle	Psoas
32	chr12:56166400-56182000	Weak transcription	Small Intestine	intestine
33	chr12:56166400-56182600	Weak transcription	Fetal Heart	heart
34	chr12:56166400-56194600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr12:56169200-56195400	Strong transcription	Primary B cells from cord blood	blood
36	chr12:56169200-56197600	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr12:56169400-56198400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:56169400-56198600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr12:56169400-56198600	Strong transcription	Dnd41	blood
40	chr12:56169600-56178200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr12:56169600-56185000	Strong transcription	Adipose Nuclei	Adipose
42	chr12:56169600-56185000	Strong transcription	HSMM	muscle
43	chr12:56169600-56185200	Strong transcription	K562	blood
44	chr12:56169600-56198200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr12:56169600-56198200	Strong transcription	Liver	Liver
46	chr12:56169800-56185000	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr12:56169800-56197600	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr12:56169800-56203400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr12:56169800-56204200	Strong transcription	Fetal Muscle Leg	muscle
50	chr12:56170000-56185200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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