Variant report

Variant	rs705716
Chromosome Location	chr12:56320746-56320747
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr12:56320441-56320824	GM10266	blood:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
2	POLR2A	chr12:56320609-56322091	K562	blood:	n/a	n/a
3	CTCF	chr12:56320596-56320790	H1-hESC	embryonic stem cell:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
4	YY1	chr12:56320520-56321209	A549	lung:	n/a	chr12:56320885-56320897 chr12:56320747-56320756
5	RAD21	chr12:56320537-56320803	K562	blood:	n/a	chr12:56320688-56320707
6	MXI1	chr12:56320503-56321968	HepG2	liver:	n/a	n/a
7	REST	chr12:56320091-56322022	H1-neurons	neurons:	n/a	chr12:56320112-56320132 chr12:56320739-56320752
8	POLR2A	chr12:56320053-56322104	PANC-1	pancreas:	n/a	n/a
9	CTCF	chr12:56320550-56320822	Fibrobl	skin:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
10	CTCF	chr12:56320620-56320770	GM12868	blood:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
11	HCFC1	chr12:56319936-56322295	Hela-S3	cervix:	n/a	n/a
12	CTCF	chr12:56320600-56320750	AG09309	skin:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
13	MAX	chr12:56320500-56322144	SK-N-SH	brain:	n/a	n/a
14	MAZ	chr12:56320537-56321311	HepG2	liver:	n/a	n/a
15	CREB1	chr12:56320514-56321422	A549	lung:	n/a	chr12:56321314-56321327
16	RAD21	chr12:56320592-56320859	GM12878	blood:	n/a	chr12:56320688-56320707
17	CTCF	chr12:56320620-56320770	HAc	cerebellar:	n/a	chr12:56320690-56320703 chr12:56320689-56320710 chr12:56320688-56320704 chr12:56320687-56320705 chr12:56320690-56320703
18	POLR2A	chr12:56320522-56322140	K562	blood:	n/a	n/a
19	TCF12	chr12:56320491-56321313	A549	lung:	n/a	n/a
20	ZBTB7A	chr12:56320117-56321920	ECC-1	luminal epithelium:	n/a	chr12:56320695-56320704
21	TAF1	chr12:56320464-56322049	K562	blood:	n/a	n/a
22	UBTF	chr12:56320436-56322064	K562	blood:	n/a	n/a
23	POLR2A	chr12:56320471-56322278	GM12878	blood:	n/a	n/a
24	CTCF	chr12:56320600-56320750	GM12870	blood:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
25	CTCF	chr12:56320590-56320778	MCF-7	breast:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
26	RAD21	chr12:56320199-56321225	IMR90	lung:	n/a	chr12:56320688-56320707 chr12:56320203-56320210
27	MYBL2	chr12:56320407-56322172	HepG2	liver:	n/a	n/a
28	CTCF	chr12:56320600-56320750	Caco-2	colon:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
29	CTCF	chr12:56320620-56320770	AG04449	skin:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
30	CTCF	chr12:56320528-56320817	Spleen_OC	spleen:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
31	MYC	chr12:56320447-56322190	K562	blood:	n/a	n/a
32	TBL1XR1	chr12:56320359-56321977	K562	blood:	n/a	n/a
33	MTA3	chr12:56320163-56320785	GM12878	blood:	n/a	n/a
34	POLR2A	chr12:56320505-56322248	Hela-S3	cervix:	n/a	n/a
35	TAF1	chr12:56320737-56321092	GM12878	blood:	n/a	n/a
36	FOXM1	chr12:56320230-56322195	GM12878	blood:	n/a	n/a
37	MAX	chr12:56320553-56321228	H1-hESC	embryonic stem cell:	n/a	n/a
38	CTCF	chr12:56320640-56320790	HRE	kidney:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
39	RCOR1	chr12:56320547-56322099	Hela-S3	cervix:	n/a	n/a
40	BCLAF1	chr12:56320476-56321109	GM12878	blood:	n/a	chr12:56320950-56320959 chr12:56320526-56320535 chr12:56320909-56320918
41	POLR2A	chr12:56320561-56322025	K562	blood:	n/a	n/a
42	POLR2A	chr12:56320344-56322019	U87	brain:	n/a	n/a
43	ELF1	chr12:56320403-56322217	MCF-7	breast:	n/a	chr12:56320909-56320920 chr12:56321484-56321496
44	YY1	chr12:56320384-56322351	H1-hESC	embryonic stem cell:	n/a	chr12:56321484-56321498 chr12:56320885-56320897 chr12:56320747-56320756 chr12:56321466-56321477
45	ZBTB7A	chr12:56320501-56321068	HepG2	liver:	n/a	chr12:56320695-56320704
46	CTCF	chr12:56320579-56320810	MCF-7	breast:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
47	CTCF	chr12:56320620-56320770	NB4	blood:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
48	CTCF	chr12:56320640-56320790	GM12867	blood:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
49	CTCF	chr12:56320620-56320770	HUVEC	blood vessel:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705
50	CTCF	chr12:56320458-56320894	K562	blood:	n/a	chr12:56320689-56320710 chr12:56320690-56320703 chr12:56320690-56320703 chr12:56320688-56320704 chr12:56320687-56320705

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:56320701-56320751	ProgFib	skin:	n/a
2	chr12:56320701-56320751	MCF-7	breast:	n/a
3	chr12:56320701-56320751	GM12878	blood:	n/a
4	chr12:56320701-56320751	HRCEpiC	kidney:	n/a
5	chr12:56320701-56320751	MCF10A-Er-Src	breast:	n/a
6	chr12:56320701-56320751	HL-60	blood:	n/a
7	chr12:56320701-56320751	AG10803	skin:	n/a
8	chr12:56320701-56320751	H1-hESC	embryonic stem cell:	embryo
9	chr12:56320701-56320751	ECC-1	luminal epithelium:	n/a
10	chr12:56320701-56320751	HUVEC	blood vessel:	n/a
11	chr12:56320701-56320751	HIPEpiC	eye:	n/a
12	chr12:56320701-56320751	LNCaP	prostate:	n/a
13	chr12:56320701-56320751	HEEpiC	esophagus:	n/a
14	chr12:56320701-56320751	SK-N-SH	brain:	n/a
15	chr12:56320701-56320751	CMK	blood:	n/a
16	chr12:56320701-56320751	GM12891	blood:	n/a
17	chr12:56320701-56320751	NH-A	brain:	n/a
18	chr12:56320701-56320751	NB4	blood:	n/a
19	chr12:56320701-56320751	NT2-D1	testis:	n/a
20	chr12:56320701-56320751	HepG2	liver:	n/a
21	chr12:56320701-56320751	AG04449	skin:	fetal
22	chr12:56320701-56320751	BE2_C	brain:	n/a
23	chr12:56320701-56320751	HAEpiC	amniotic membrane:	n/a
24	chr12:56320701-56320751	SK-N-SH_RA	brain:	n/a
25	chr12:56320701-56320751	Jurkat	blood:	n/a
26	chr12:56320701-56320751	HRPEpiC	eye:	n/a
27	chr12:56320701-56320751	HCF	heart:	n/a
28	chr12:56320701-56320751	BJ	skin:	n/a
29	chr12:56320701-56320751	NHBE	bronchial:	n/a
30	chr12:56320701-56320751	AG09309	skin:	n/a
31	chr12:56320701-56320751	HCPEpiC	choroid plexus:	n/a
32	chr12:56320701-56320751	GM06990	blood:	n/a
33	chr12:56320701-56320751	HRE	kidney:	n/a
34	chr12:56320701-56320751	AoSMC	blood vessel:	n/a
35	chr12:56320701-56320751	GM12892	blood:	n/a
36	chr12:56320701-56320751	U87	brain:	n/a
37	chr12:56320701-56320751	PFSK-1	brain:	n/a
38	chr12:56320701-56320751	Caco-2	colon:	n/a
39	chr12:56320701-56320751	ovcar-3	ovarian:	n/a
40	chr12:56320701-56320751	SAEC	small airway:	n/a
41	chr12:56320701-56320751	GM19239	blood:	n/a
42	chr12:56320701-56320751	HPAEpiC	pulmonary alveolar:	n/a
43	chr12:56320701-56320751	PANC-1	pancreas:	n/a
44	chr12:56320701-56320751	HCT-116	colon:	n/a
45	chr12:56320701-56320751	A549	lung:	n/a
46	chr12:56320701-56320751	HCM	heart:	n/a
47	chr12:56320701-56320751	RPTEC	kidney:	n/a
48	chr12:56320701-56320751	Hepatocyte	liver:	n/a
49	chr12:56320701-56320751	NHDF-neo	bronchial:	n/a
50	chr12:56320701-56320751	Hela-S3	cervix:	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:56318003..56321783-chr12:56433300..56437111,4	K562	blood:
2	chr12:56211662..56213593-chr12:56320133..56321834,2	K562	blood:
3	chr12:56319938..56322898-chr12:56413808..56415647,2	MCF-7	breast:
4	chr12:56320141..56322602-chr12:56350018..56351864,3	MCF-7	breast:
5	chr12:56319824..56321701-chr12:56366631..56369066,2	K562	blood:
6	chr12:56208117..56217611-chr12:56318345..56328982,45	MCF-7	breast:
7	chr12:56235299..56237964-chr12:56318777..56323177,4	MCF-7	breast:
8	chr12:56121779..56124068-chr12:56319367..56323030,5	K562	blood:
9	chr12:56208546..56216914-chr12:56318326..56328671,24	MCF-7	breast:
10	chr12:56318132..56330507-chr12:56363672..56369798,22	MCF-7	breast:
11	chr12:56319178..56327497-chr12:56356755..56363470,19	MCF-7	breast:
12	chr12:56134894..56138354-chr12:56318411..56324580,8	MCF-7	breast:
13	chr12:56320231..56321842-chr17:59476539..59478120,2	MCF-7	breast:
14	chr12:56222737..56223503-chr12:56320148..56320774,2	MCF-7	breast:
15	chr12:56319711..56323865-chr12:56387409..56394085,7	MCF-7	breast:
16	chr12:56121796..56124636-chr12:56320580..56323901,5	MCF-7	breast:
17	chr12:56217992..56226798-chr12:56311494..56331042,68	MCF-7	breast:
18	chr12:56210386..56214682-chr12:56319005..56323153,8	K562	blood:
19	chr12:56320120..56322024-chr3:197516845..197519613,2	MCF-7	breast:
20	chr12:56320607..56321176-chr12:56435048..56435820,2	K562	blood:
21	chr12:56234715..56236964-chr12:56319809..56321457,2	K562	blood:
22	chr12:56122497..56123435-chr12:56320291..56320881,2	MCF-7	breast:
23	chr12:56217492..56232243-chr12:56318854..56330686,48	MCF-7	breast:
24	chr12:56320678..56321642-chr18:32870073..32870777,2	Hela-S3	cervix:
25	chr12:56318939..56322802-chr12:56399424..56402892,5	MCF-7	breast:
26	chr12:56232360..56237326-chr12:56316163..56320896,5	K562	blood:
27	chr12:56318993..56322413-chr12:56389425..56391488,3	K562	blood:
28	chr12:56318492..56327488-chr12:56364288..56371675,16	MCF-7	breast:
29	chr12:56320034..56323218-chr12:56434982..56437337,4	K562	blood:
30	chr12:56318896..56320843-chr12:56435273..56437291,3	MCF-7	breast:
31	chr12:56318129..56322590-chr12:56359033..56362321,5	K562	blood:
32	chr12:56319082..56322613-chr12:56358459..56362927,5	MCF-7	breast:
33	chr12:56120587..56125243-chr12:56320195..56323478,6	MCF-7	breast:
34	chr12:56122193..56124805-chr12:56319367..56323067,7	K562	blood:
35	chr12:56318215..56321869-chr12:56472079..56475131,3	MCF-7	breast:
36	chr12:56264439..56267013-chr12:56319966..56322100,2	MCF-7	breast:
37	chr1:153939681..153940578-chr12:56320285..56321150,2	Hela-S3	cervix:
38	chr12:56319021..56322273-chr12:56510153..56512208,3	K562	blood:
39	chr12:56223239..56223746-chr12:56320304..56321029,2	MCF-7	breast:
40	chr12:56219783..56227072-chr12:56318292..56323886,14	K562	blood:
41	chr12:56320184..56328034-chr12:56431937..56442233,20	MCF-7	breast:
42	chr12:56318513..56323358-chr12:56346151..56349389,6	MCF-7	breast:
43	chr12:56217816..56225905-chr12:56319649..56327312,13	K562	blood:
44	chr12:56320118..56322111-chr12:56348872..56350934,2	K562	blood:
45	chr12:56319967..56322287-chr12:56473106..56474816,2	K562	blood:
46	chr12:56319307..56323047-chr12:56359033..56361996,7	K562	blood:
47	chr12:56319334..56320834-chr12:56365847..56367412,2	K562	blood:
48	chr12:56233687..56236115-chr12:56320248..56323583,3	MCF-7	breast:
49	chr12:56319350..56329795-chr12:56348492..56353182,19	MCF-7	breast:

Variant related genes	Relation type
DGKA	TF binding region
DGKA	CpG island
ENSG00000123374	Chromatin interaction
ENSG00000257449	Chromatin interaction
ENSG00000111540	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000257267	Chromatin interaction
ENSG00000065357	Chromatin interaction
ENSG00000257966	Chromatin interaction
ENSG00000135392	Chromatin interaction
ENSG00000205323	Chromatin interaction
ENSG00000229117	Chromatin interaction
ENSG00000143570	Chromatin interaction
ENSG00000143578	Chromatin interaction
ENSG00000267131	Chromatin interaction
ENSG00000123411	Chromatin interaction
ENSG00000258056	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000258554	Chromatin interaction
ENSG00000135404	Chromatin interaction
ENSG00000123353	Chromatin interaction
ENSG00000197728	Chromatin interaction
ENSG00000065361	Chromatin interaction
ENSG00000185664	Chromatin interaction
ENSG00000268573	Chromatin interaction
ENSG00000186814	Chromatin interaction
ENSG00000182796	Chromatin interaction
ENSG00000123342	Chromatin interaction
ENSG00000139641	Chromatin interaction
ENSG00000186001	Chromatin interaction
ENSG00000135482	Chromatin interaction
ENSG00000135414	Chromatin interaction
ENSG00000139531	Chromatin interaction
ENSG00000257390	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1066130	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1068188	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1068189	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1088050	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1091527	1.00[EUR][1000 genomes]
rs11829187	1.00[ASN][1000 genomes]
rs11831133	1.00[ASN][1000 genomes]
rs11833164	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11834873	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11835018	1.00[EUR][1000 genomes]
rs11835310	1.00[EUR][1000 genomes]
rs11838363	1.00[ASN][1000 genomes]
rs1626158	1.00[EUR][1000 genomes]
rs1681071	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681079	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681080	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681088	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1689508	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1689509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1689517	1.00[EUR][1000 genomes]
rs1689518	1.00[EUR][1000 genomes]
rs1701701	1.00[EUR][1000 genomes]
rs1701702	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1702872	1.00[EUR][1000 genomes]
rs2035948	1.00[EUR][1000 genomes]
rs2046293	1.00[ASN][1000 genomes]
rs2625137	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2625146	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2640566	1.00[EUR][1000 genomes]
rs2640568	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2658478	1.00[EUR][1000 genomes]
rs2661728	1.00[EUR][1000 genomes]
rs2661729	1.00[EUR][1000 genomes]
rs2934152	1.00[EUR][1000 genomes]
rs34323718	1.00[EUR][1000 genomes]
rs4417324	1.00[EUR][1000 genomes]
rs56696262	1.00[EUR][1000 genomes]
rs57237559	1.00[EUR][1000 genomes]
rs57785224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57990974	1.00[EUR][1000 genomes]
rs59794023	1.00[EUR][1000 genomes]
rs61733171	1.00[EUR][1000 genomes]
rs705697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs705710	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs705712	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs705713	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs705714	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs705717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7298109	1.00[EUR][1000 genomes]
rs7300292	1.00[EUR][1000 genomes]
rs7304690	1.00[EUR][1000 genomes]
rs7309327	1.00[EUR][1000 genomes]
rs7310292	1.00[EUR][1000 genomes]
rs73336393	1.00[ASN][1000 genomes]
rs73336399	1.00[ASN][1000 genomes]
rs73336402	1.00[ASN][1000 genomes]
rs73338377	1.00[EUR][1000 genomes]
rs73338385	1.00[EUR][1000 genomes]
rs772459	1.00[EUR][1000 genomes]
rs772463	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs772464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs772467	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs772470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs772474	1.00[EUR][1000 genomes]
rs772697	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs772698	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs772699	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs772701	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs772705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954155	1.00[EUR][1000 genomes]
rs7957187	1.00[EUR][1000 genomes]
rs7958958	1.00[EUR][1000 genomes]
rs7975037	1.00[EUR][1000 genomes]
rs7980782	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051961	chr12:56262220-56629427	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	284 gene(s)	inside rSNPs	diseases
2	nsv832424	chr12:56275226-56466917	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	121 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56319600-56321400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:56319600-56322200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:56319800-56320800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr12:56319800-56320800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr12:56319800-56322000	Active TSS	Psoas Muscle	Psoas
6	chr12:56319800-56322200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr12:56319800-56322200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:56319800-56322400	Active TSS	H9 Cell Line	embryonic stem cell
9	chr12:56319800-56322400	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr12:56319800-56322400	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr12:56319800-56322400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:56319800-56322400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr12:56319800-56326600	Active TSS	Thymus	Thymus
14	chr12:56320000-56320800	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr12:56320000-56320800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:56320000-56321000	Active TSS	HepG2	liver
17	chr12:56320000-56321400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr12:56320000-56321600	Active TSS	Fetal Muscle Trunk	muscle
19	chr12:56320000-56321800	Active TSS	Stomach Smooth Muscle	stomach
20	chr12:56320000-56321800	Active TSS	K562	blood
21	chr12:56320000-56322000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr12:56320000-56322000	Active TSS	Esophagus	oesophagus
23	chr12:56320000-56322000	Active TSS	Fetal Intestine Large	intestine
24	chr12:56320000-56322000	Active TSS	Stomach Mucosa	stomach
25	chr12:56320000-56322200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr12:56320000-56322200	Active TSS	A549	lung
27	chr12:56320000-56322400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr12:56320000-56322400	Active TSS	Fetal Kidney	kidney
29	chr12:56320000-56322600	Active TSS	H1 Cell Line	embryonic stem cell
30	chr12:56320000-56322600	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr12:56320000-56322600	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr12:56320000-56322600	Active TSS	GM12878-XiMat	blood
33	chr12:56320000-56322800	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr12:56320200-56320800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr12:56320200-56321200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr12:56320200-56321800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr12:56320200-56321800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr12:56320200-56321800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
39	chr12:56320200-56321800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr12:56320200-56321800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr12:56320200-56321800	Active TSS	Fetal Brain Male	brain
42	chr12:56320200-56321800	Active TSS	Fetal Stomach	stomach
43	chr12:56320200-56321800	Active TSS	HSMM	muscle
44	chr12:56320200-56321800	Active TSS	HSMMtube	muscle
45	chr12:56320200-56322000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr12:56320200-56322000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr12:56320200-56322000	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr12:56320200-56322000	Active TSS	Muscle Satellite Cultured Cells	--
49	chr12:56320200-56322000	Active TSS	Fetal Heart	heart
50	chr12:56320200-56322000	Active TSS	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links