The 2.0 version of rSNPBase

Variant report

Variant rs11829187
Chromosome Location chr12:56340332-56340333
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:56326400-56345000 Weak transcription Ovary ovary
2 chr12:56328800-56352200 Weak transcription Small Intestine intestine
3 chr12:56334000-56345000 Weak transcription iPS-18 Cell Line embryonic stem cell
4 chr12:56334000-56349800 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr12:56334200-56343600 Strong transcription Primary B cells from cord blood blood
6 chr12:56334200-56345400 Weak transcription H9 Cell Line embryonic stem cell
7 chr12:56334200-56349800 Strong transcription Primary neutrophils fromperipheralblood blood
8 chr12:56334400-56343600 Strong transcription Primary monocytes fromperipheralblood blood
9 chr12:56334400-56343800 Strong transcription Monocytes-CD14+_RO01746 blood
10 chr12:56334400-56345000 Weak transcription Left Ventricle heart
11 chr12:56334400-56345200 Weak transcription Lung lung
12 chr12:56334400-56345400 Weak transcription Liver Liver
13 chr12:56334400-56347400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr12:56334400-56348400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr12:56334400-56349400 Strong transcription Thymus Thymus
16 chr12:56334600-56340400 Strong transcription Rectal Mucosa Donor 31 rectum
17 chr12:56334600-56340600 Strong transcription Fetal Adrenal Gland Adrenal Gland
18 chr12:56334600-56340600 Strong transcription Placenta Placenta
19 chr12:56334600-56342400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr12:56334600-56342600 Strong transcription Rectal Mucosa Donor 29 rectum
21 chr12:56334600-56343000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
22 chr12:56334600-56343200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr12:56334600-56343400 Strong transcription Primary B cells from peripheral blood blood
24 chr12:56334600-56343600 Strong transcription Primary hematopoietic stem cells short term culture blood
25 chr12:56334600-56343600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr12:56334600-56344800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr12:56334600-56345000 Weak transcription HUES64 Cell Line embryonic stem cell
28 chr12:56334600-56345000 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr12:56334600-56345000 Weak transcription Brain Angular Gyrus brain
30 chr12:56334600-56345000 Weak transcription Brain Anterior Caudate brain
31 chr12:56334600-56345200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr12:56334600-56345200 Weak transcription Pancreas Pancrea
33 chr12:56334600-56345200 Weak transcription Right Ventricle heart
34 chr12:56334600-56345200 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr12:56334600-56345600 Weak transcription H1 Cell Line embryonic stem cell
36 chr12:56334600-56345600 Weak transcription Brain Cingulate Gyrus brain
37 chr12:56334600-56345800 Weak transcription HUES6 Cell Line embryonic stem cell
38 chr12:56334600-56345800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr12:56334600-56345800 Weak transcription Brain Inferior Temporal Lobe brain
40 chr12:56334600-56346000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr12:56334600-56346400 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr12:56334600-56346600 Weak transcription Brain Hippocampus Middle brain
43 chr12:56334600-56347400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
44 chr12:56334600-56348000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
45 chr12:56334600-56348400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr12:56334600-56349000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
47 chr12:56334600-56349000 Weak transcription Brain Substantia Nigra brain
48 chr12:56334600-56349000 Strong transcription NHEK skin
49 chr12:56334600-56349400 Strong transcription Dnd41 blood
50 chr12:56334600-56349800 Weak transcription Stomach Mucosa stomach

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Last update: Aug 31, 2015