The 2.0 version of rSNPBase

Variant report

Variant rs11838363
Chromosome Location chr12:56339733-56339734
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:56326400-56345000 Weak transcription Ovary ovary
2 chr12:56328800-56352200 Weak transcription Small Intestine intestine
3 chr12:56332000-56339800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr12:56334000-56345000 Weak transcription iPS-18 Cell Line embryonic stem cell
5 chr12:56334000-56349800 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr12:56334200-56340000 Genic enhancers Primary T helper naive cells fromperipheralblood blood
7 chr12:56334200-56340200 Strong transcription Placenta Amnion Placenta Amnion
8 chr12:56334200-56343600 Strong transcription Primary B cells from cord blood blood
9 chr12:56334200-56345400 Weak transcription H9 Cell Line embryonic stem cell
10 chr12:56334200-56349800 Strong transcription Primary neutrophils fromperipheralblood blood
11 chr12:56334400-56343600 Strong transcription Primary monocytes fromperipheralblood blood
12 chr12:56334400-56343800 Strong transcription Monocytes-CD14+_RO01746 blood
13 chr12:56334400-56345000 Weak transcription Left Ventricle heart
14 chr12:56334400-56345200 Weak transcription Lung lung
15 chr12:56334400-56345400 Weak transcription Liver Liver
16 chr12:56334400-56347400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr12:56334400-56348400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr12:56334400-56349400 Strong transcription Thymus Thymus
19 chr12:56334600-56339800 Strong transcription Esophagus oesophagus
20 chr12:56334600-56340000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr12:56334600-56340200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr12:56334600-56340200 Strong transcription Sigmoid Colon Sigmoid Colon
23 chr12:56334600-56340400 Strong transcription Rectal Mucosa Donor 31 rectum
24 chr12:56334600-56340600 Strong transcription Fetal Adrenal Gland Adrenal Gland
25 chr12:56334600-56340600 Strong transcription Placenta Placenta
26 chr12:56334600-56342400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr12:56334600-56342600 Strong transcription Rectal Mucosa Donor 29 rectum
28 chr12:56334600-56343000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
29 chr12:56334600-56343200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr12:56334600-56343400 Strong transcription Primary B cells from peripheral blood blood
31 chr12:56334600-56343600 Strong transcription Primary hematopoietic stem cells short term culture blood
32 chr12:56334600-56343600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr12:56334600-56344800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr12:56334600-56345000 Weak transcription HUES64 Cell Line embryonic stem cell
35 chr12:56334600-56345000 Weak transcription iPS-15b Cell Line embryonic stem cell
36 chr12:56334600-56345000 Weak transcription Brain Angular Gyrus brain
37 chr12:56334600-56345000 Weak transcription Brain Anterior Caudate brain
38 chr12:56334600-56345200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr12:56334600-56345200 Weak transcription Pancreas Pancrea
40 chr12:56334600-56345200 Weak transcription Right Ventricle heart
41 chr12:56334600-56345200 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr12:56334600-56345600 Weak transcription H1 Cell Line embryonic stem cell
43 chr12:56334600-56345600 Weak transcription Brain Cingulate Gyrus brain
44 chr12:56334600-56345800 Weak transcription HUES6 Cell Line embryonic stem cell
45 chr12:56334600-56345800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr12:56334600-56345800 Weak transcription Brain Inferior Temporal Lobe brain
47 chr12:56334600-56346000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr12:56334600-56346400 Weak transcription iPS-20b Cell Line embryonic stem cell
49 chr12:56334600-56346600 Weak transcription Brain Hippocampus Middle brain
50 chr12:56334600-56347400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015