Variant report

Variant	rs7985691
Chromosome Location	chr13:97007163-97007164
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11069237	0.84[AFR][1000 genomes]
rs12050064	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1475296	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1925107	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1925115	0.80[EUR][1000 genomes]
rs1925119	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2147687	0.86[ASN][1000 genomes]
rs2149315	0.82[ASN][1000 genomes]
rs2183981	0.91[AFR][1000 genomes]
rs2389631	0.82[ASN][1000 genomes]
rs4771935	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4771936	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4773947	0.82[ASN][1000 genomes]
rs7139408	0.95[ASN][1000 genomes]
rs7323332	0.96[ASN][1000 genomes]
rs7323705	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7324569	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7328493	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7990281	0.82[ASN][1000 genomes]
rs927710	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9554345	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9556554	0.80[EUR][1000 genomes]
rs9556555	0.80[EUR][1000 genomes]
rs9556567	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9556570	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9556574	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9556575	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9556576	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
7	nsv900937	chr13:96976345-97275932	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv562792	chr13:96976345-97563413	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97007000-97007200	Enhancers	Pancreatic Islets	Pancreatic Islet

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