Variant report

Variant	rs1925119
Chromosome Location	chr13:96939586-96939587
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96933248..96934803-chr13:96938522..96940997,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16953068	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1925107	0.82[EUR][1000 genomes]
rs1925115	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1925122	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1927804	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1930219	0.96[ASN][1000 genomes]
rs2147687	0.96[ASN][1000 genomes]
rs2149315	0.99[ASN][1000 genomes]
rs2389631	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4771932	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4771935	0.84[EUR][1000 genomes]
rs4773947	0.99[ASN][1000 genomes]
rs61966875	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6491285	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7139408	0.86[ASN][1000 genomes]
rs7320065	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7323056	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7323332	0.87[ASN][1000 genomes]
rs7337506	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7981845	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7981931	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7985691	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7990281	0.94[ASN][1000 genomes]
rs8002865	0.92[ASN][1000 genomes]
rs9525166	0.94[ASN][1000 genomes]
rs9525171	0.96[ASN][1000 genomes]
rs9554345	0.84[EUR][1000 genomes]
rs9556550	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9556551	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9556554	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9556555	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9556567	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96936800-96940200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr13:96938400-96946000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:96938600-96946400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links