Variant report

Variant	rs8002865
Chromosome Location	chr13:96895532-96895533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1072563	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1925119	0.92[ASN][1000 genomes]
rs1927804	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927805	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1927808	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1930219	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1930223	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2147687	0.89[ASN][1000 genomes]
rs2149315	0.94[ASN][1000 genomes]
rs2149316	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2149317	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2182987	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2389629	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2389631	0.94[ASN][1000 genomes]
rs3759441	0.81[CEU][hapmap]
rs3759442	0.82[CEU][hapmap]
rs4773947	0.94[ASN][1000 genomes]
rs764574	0.81[EUR][1000 genomes]
rs7987636	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7990281	0.86[ASN][1000 genomes]
rs7997409	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9302095	0.83[EUR][1000 genomes]
rs9516642	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9516648	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9516649	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9516651	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9516653	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9525166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9525169	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9525171	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9562060	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9590372	0.80[EUR][1000 genomes]
rs9634487	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1136	chr13:96892691-96937795	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96891200-96895600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr13:96892600-96895600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr13:96895400-96896000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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