Variant report

Variant	rs2149316
Chromosome Location	chr13:96901225-96901226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1072563	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953068	0.93[ASN][1000 genomes]
rs1925115	0.93[ASN][1000 genomes]
rs1925122	0.95[ASN][1000 genomes]
rs1927790	0.98[ASN][1000 genomes]
rs1927804	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1927805	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927808	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1930219	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1930223	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2149317	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2182987	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2389629	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4771932	0.93[ASN][1000 genomes]
rs4771935	0.84[ASN][1000 genomes]
rs61966875	0.96[ASN][1000 genomes]
rs6491285	0.93[ASN][1000 genomes]
rs7320065	0.96[ASN][1000 genomes]
rs7323056	0.92[ASN][1000 genomes]
rs7337506	0.96[ASN][1000 genomes]
rs748457	0.98[ASN][1000 genomes]
rs7981845	0.96[ASN][1000 genomes]
rs7981931	0.98[ASN][1000 genomes]
rs7984912	0.93[ASN][1000 genomes]
rs7987636	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997409	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8002865	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9302095	0.92[ASN][1000 genomes]
rs9516642	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9516648	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9516649	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516651	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516653	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9525166	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9525169	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9525171	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9554333	0.98[ASN][1000 genomes]
rs9554345	0.84[ASN][1000 genomes]
rs9556550	0.90[ASN][1000 genomes]
rs9556551	0.93[ASN][1000 genomes]
rs9556554	0.90[ASN][1000 genomes]
rs9556555	0.93[ASN][1000 genomes]
rs9556567	0.82[ASN][1000 genomes]
rs9556570	0.81[ASN][1000 genomes]
rs9562060	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1136	chr13:96892691-96937795	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96897800-96902800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:96899600-96901800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:96899800-96901400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:96899800-96901400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:96899800-96901400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:96900800-96901400	Enhancers	Fetal Intestine Small	intestine
7	chr13:96901000-96901400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:96901000-96901600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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