Variant report
Variant | rs9554333 |
---|---|
Chromosome Location | chr13:96922716-96922717 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1072563 | 0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs11841294 | 0.81[EUR][1000 genomes] |
rs1475296 | 0.81[ASN][1000 genomes] |
rs16953068 | 0.95[ASN][1000 genomes] |
rs1925115 | 0.82[AFR][1000 genomes];0.95[ASN][1000 genomes] |
rs1925122 | 0.97[ASN][1000 genomes] |
rs1927785 | 0.85[EUR][1000 genomes] |
rs1927786 | 0.81[EUR][1000 genomes] |
rs1927788 | 0.81[EUR][1000 genomes] |
rs1927789 | 0.81[EUR][1000 genomes] |
rs1927790 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1927791 | 0.85[EUR][1000 genomes] |
rs1927792 | 0.81[EUR][1000 genomes] |
rs1927793 | 0.84[EUR][1000 genomes] |
rs1927794 | 0.85[EUR][1000 genomes] |
rs1927795 | 0.80[EUR][1000 genomes] |
rs1927805 | 0.98[ASN][1000 genomes] |
rs1927808 | 0.92[ASN][1000 genomes] |
rs1930221 | 0.80[EUR][1000 genomes] |
rs1930223 | 0.93[ASN][1000 genomes] |
rs2147687 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs2149315 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2149316 | 0.98[ASN][1000 genomes] |
rs2149317 | 0.92[ASN][1000 genomes] |
rs2182987 | 0.96[ASN][1000 genomes] |
rs2389629 | 0.93[ASN][1000 genomes] |
rs4771932 | 0.95[ASN][1000 genomes] |
rs4771935 | 0.86[ASN][1000 genomes] |
rs4771936 | 0.81[ASN][1000 genomes] |
rs4773947 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs4773948 | 0.81[EUR][1000 genomes] |
rs61966875 | 0.98[ASN][1000 genomes] |
rs6491285 | 0.81[AFR][1000 genomes];0.95[ASN][1000 genomes] |
rs7320065 | 0.98[ASN][1000 genomes] |
rs7323056 | 0.81[AFR][1000 genomes];0.94[ASN][1000 genomes] |
rs7323332 | 0.82[EUR][1000 genomes] |
rs7328493 | 0.81[ASN][1000 genomes] |
rs7331395 | 0.81[EUR][1000 genomes] |
rs7334728 | 0.81[EUR][1000 genomes] |
rs7336212 | 0.81[EUR][1000 genomes] |
rs7337506 | 0.98[ASN][1000 genomes] |
rs7337860 | 0.84[EUR][1000 genomes] |
rs748457 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7981845 | 0.98[ASN][1000 genomes] |
rs7981931 | 1.00[ASN][1000 genomes] |
rs7984912 | 0.90[ASN][1000 genomes] |
rs7986153 | 0.81[EUR][1000 genomes] |
rs7987636 | 0.98[ASN][1000 genomes] |
rs7990281 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs7997409 | 0.93[ASN][1000 genomes] |
rs927710 | 0.81[ASN][1000 genomes] |
rs9300341 | 0.84[EUR][1000 genomes] |
rs9302095 | 0.90[ASN][1000 genomes] |
rs9516642 | 0.90[ASN][1000 genomes] |
rs9516648 | 0.90[ASN][1000 genomes] |
rs9516649 | 0.98[ASN][1000 genomes] |
rs9516651 | 0.98[ASN][1000 genomes] |
rs9516653 | 0.98[ASN][1000 genomes] |
rs9525169 | 0.98[ASN][1000 genomes] |
rs9554335 | 0.81[EUR][1000 genomes] |
rs9554345 | 0.86[ASN][1000 genomes] |
rs9556537 | 0.85[EUR][1000 genomes] |
rs9556538 | 0.85[EUR][1000 genomes] |
rs9556541 | 0.85[EUR][1000 genomes] |
rs9556550 | 0.81[AFR][1000 genomes];0.92[ASN][1000 genomes] |
rs9556551 | 0.85[AFR][1000 genomes];0.95[ASN][1000 genomes] |
rs9556554 | 0.92[ASN][1000 genomes] |
rs9556555 | 0.84[AFR][1000 genomes];0.95[ASN][1000 genomes] |
rs9556567 | 0.84[ASN][1000 genomes] |
rs9556570 | 0.83[ASN][1000 genomes] |
rs9562060 | 0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1050430 | chr13:96508530-97020734 | Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | nsv541883 | chr13:96508530-97020734 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | nsv1041165 | chr13:96522021-96966520 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
4 | nsv869471 | chr13:96622327-97223956 | Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
5 | nsv530390 | chr13:96681439-97193029 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
6 | nsv900936 | chr13:96697209-97032483 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
7 | nsv1136 | chr13:96892691-96937795 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv530742 | chr13:96917313-97627023 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 10 gene(s) | inside rSNPs | diseases |
9 | nsv976262 | chr13:96918599-96924766 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
10 | esv3515251 | chr13:96919651-96926085 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
11 | esv3515240 | chr13:96919697-96926062 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
12 | esv3515229 | chr13:96919723-96926006 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
13 | esv3443151 | chr13:96919777-96925959 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
14 | esv3515262 | chr13:96919792-96925955 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
15 | esv10256 | chr13:96919835-96926010 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
16 | esv2760278 | chr13:96920844-96924615 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
17 | nsv519951 | chr13:96922191-96923515 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:96921800-96925200 | Enhancers | Fetal Intestine Large | intestine |
2 | chr13:96922200-96922800 | Enhancers | Pancreatic Islets | Pancreatic Islet |
3 | chr13:96922200-96924800 | Enhancers | Fetal Intestine Small | intestine |
4 | chr13:96922600-96926600 | Weak transcription | Pancreas | Pancrea |