Variant report

Variant	rs1927793
Chromosome Location	chr13:96921287-96921288
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11841294	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12428610	0.87[ASN][1000 genomes]
rs1327634	0.87[ASN][1000 genomes]
rs1925116	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1925118	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1925121	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1927785	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927786	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1927788	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1927789	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1927790	0.84[EUR][1000 genomes]
rs1927791	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927792	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1927794	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927795	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1927807	0.88[ASN][1000 genomes]
rs1927809	0.87[ASN][1000 genomes]
rs1930221	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2149315	0.80[EUR][1000 genomes]
rs2149318	0.87[ASN][1000 genomes]
rs2182988	0.87[ASN][1000 genomes]
rs4773942	0.87[ASN][1000 genomes]
rs4773944	0.87[ASN][1000 genomes]
rs4773947	0.80[EUR][1000 genomes]
rs4773948	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6492840	0.81[ASN][1000 genomes]
rs7322776	0.86[ASN][1000 genomes]
rs7323137	0.86[ASN][1000 genomes]
rs7325654	0.84[ASN][1000 genomes]
rs7329425	0.86[ASN][1000 genomes]
rs7331395	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7334728	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336212	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7337860	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748457	0.84[EUR][1000 genomes]
rs7985299	0.85[ASN][1000 genomes]
rs7986153	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7992274	0.85[ASN][1000 genomes]
rs7998759	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8001097	0.99[ASN][1000 genomes]
rs9300341	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302096	0.87[ASN][1000 genomes]
rs9302097	0.87[ASN][1000 genomes]
rs9302098	0.87[ASN][1000 genomes]
rs943560	0.84[ASN][1000 genomes]
rs9513119	0.99[ASN][1000 genomes]
rs9525150	0.87[ASN][1000 genomes]
rs9525154	0.86[ASN][1000 genomes]
rs9525156	0.87[ASN][1000 genomes]
rs9525158	0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs9554333	0.84[EUR][1000 genomes]
rs9554335	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9556537	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556538	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556541	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9562045	0.83[ASN][1000 genomes]
rs9562050	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1136	chr13:96892691-96937795	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
9	nsv976262	chr13:96918599-96924766	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3515251	chr13:96919651-96926085	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3515240	chr13:96919697-96926062	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3515229	chr13:96919723-96926006	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3443151	chr13:96919777-96925959	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3515262	chr13:96919792-96925955	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv10256	chr13:96919835-96926010	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv2760278	chr13:96920844-96924615	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96918600-96922200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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