Variant report

Variant	rs8001097
Chromosome Location	chr13:96945882-96945883
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12428610	0.86[ASN][1000 genomes]
rs1327634	0.86[ASN][1000 genomes]
rs16953068	0.84[EUR][1000 genomes]
rs1925115	0.83[EUR][1000 genomes]
rs1925122	0.81[EUR][1000 genomes]
rs1927785	0.99[ASN][1000 genomes]
rs1927791	0.99[ASN][1000 genomes]
rs1927793	0.99[ASN][1000 genomes]
rs1927794	0.99[ASN][1000 genomes]
rs1927807	0.86[ASN][1000 genomes]
rs1927809	0.86[ASN][1000 genomes]
rs2149318	0.86[ASN][1000 genomes]
rs2182988	0.86[ASN][1000 genomes]
rs4771932	0.84[EUR][1000 genomes]
rs4773942	0.86[ASN][1000 genomes]
rs4773944	0.86[ASN][1000 genomes]
rs61966875	0.81[EUR][1000 genomes]
rs6491285	0.86[EUR][1000 genomes]
rs7320065	0.81[EUR][1000 genomes]
rs7322776	0.84[ASN][1000 genomes]
rs7323056	0.81[EUR][1000 genomes]
rs7323137	0.84[ASN][1000 genomes]
rs7325654	0.83[ASN][1000 genomes]
rs7329425	0.84[ASN][1000 genomes]
rs7334728	0.99[ASN][1000 genomes]
rs7337506	0.81[EUR][1000 genomes]
rs7337860	0.99[ASN][1000 genomes]
rs7981845	0.84[EUR][1000 genomes]
rs7981931	0.81[EUR][1000 genomes]
rs7985299	0.84[ASN][1000 genomes]
rs7992274	0.84[ASN][1000 genomes]
rs9300341	0.99[ASN][1000 genomes]
rs9302096	0.86[ASN][1000 genomes]
rs9302097	0.86[ASN][1000 genomes]
rs9302098	0.86[ASN][1000 genomes]
rs943560	0.83[ASN][1000 genomes]
rs9513119	0.98[ASN][1000 genomes]
rs9525150	0.86[ASN][1000 genomes]
rs9525154	0.84[ASN][1000 genomes]
rs9525156	0.86[ASN][1000 genomes]
rs9525158	0.86[ASN][1000 genomes]
rs9556537	0.97[ASN][1000 genomes]
rs9556538	0.99[ASN][1000 genomes]
rs9556541	0.99[ASN][1000 genomes]
rs9556550	0.82[EUR][1000 genomes]
rs9556551	0.84[EUR][1000 genomes]
rs9556554	0.83[EUR][1000 genomes]
rs9556555	0.83[EUR][1000 genomes]
rs9562045	0.82[ASN][1000 genomes]
rs9562050	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96938400-96946000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:96938600-96946400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr13:96941000-96946600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:96945800-96946200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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